Non-Coding RNA Search

Ss1.1-rspc029_f24.5

Sequence:


               
               CTGAGATATGTGTGTTGAATTGTTTCCTTGGTTGGTGGGGAAAAAAAAAAAAATCCTCCA
GAGTATACATAATAATCTAACGAAAGCCATATTTCCATGATATATACCTGCACGTATATA
TCCTATTAAGGACCCATGGTACTGCTAAAACACCTTGGCACCCTGTGAAGCAGTAAGAAG
AGGCAGATTTGTACACAACTTTTTCGTTTCCATAAGTGACAACCTGAAAACCCACGCAGG
TTCGTCCTTCTGTGCGACGGGCCAGCTGCTCTGGGGGAAGAAGCTGCAAGTTATTTGTTT
TCGCAGAGAGCAAAGGAGATAATACTCTAAGGGATCACATTCAAGGAGGACTGTGCAGTT
TTAGAGCAAGGATTTGTTTATGAGGGAATGAGACTACTCCCTATCCCGGTGTTATCTTTT
CCTCTGAAGGCAAAAAAAAAAAAAAAAAAAAAAAAATTCTCTACCTTCTGACAAGTCCCT
CAAGGTCTTGAAATCAAAGGTTCTACGCAAGTGCAAAGTTTAATAGTTATTTATATGGCT
GATTACTATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAGATATGTGTGTTGAATTGTTTCCTTGGTTGGTGGGGAAAAAAAAAAAAATCCTCCA
GAGTATACATAATAATCTAACGAAAGCCATATTTCCATGATATATACCTGCACGTATATA
TCCTATTAAGGACCCATGGTACTGCTAAAACACCTTGGCACCCTGTGAAGCAGTAAGAAG
AGGCAGATTTGTACACAACTTTTTCGTTTCCATAAGTGACAACCTGAAAACCCACGCAGG
TTCGTCCTTCTGTGCGACGGGCCAGCTGCTCTGGGGGAAGAAGCTGCAAGTTATTTGTTT
TCGCAGAGAGCAAAGGAGATAATACTCTAAGGGATCACATTCAAGGAGGACTGTGCAGTT
TTAGAGCAAGGATTTGTTTATGAGGGAATGAGACTACTCCCTATCCCGGTGTTATCTTTT
CCTCTGAAGGCAAAAAAAAAAAAAAAAAAAAAAAAATTCTCTACCTTCTGACAAGTCCCT
CAAGGTCTTGAAATCAAAGGTTCTACGCAAGTGCAAAGTTTAATAGTTATTTATATGGCT
GATTACTATTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-176, + strand, RNAz p=0.999977

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-176, + strand, RNAz p=0.999977

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               67-176, BovGen_07274 normal cattle brain Bos taurus cDNA clone (gb|CO878949.1|), 
blast E-value=3e-30, identity=90.91% 
               

               
               67-176, LB02810.CR_P18 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV908398.1|), 
blast E-value=3e-30, identity=90.91%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               67-176, BovGen_07274 normal cattle brain Bos taurus cDNA clone (gb|CO878949.1|), 
blast E-value=3e-30, identity=90.91% 
               

               
               67-176, LB02810.CR_P18 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV908398.1|), 
blast E-value=3e-30, identity=90.91%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-552, gnl|bosTau2|chr8 (43345127-43345687)
               

               
               2-552, gnl|Hg17|chr9 (84868016-84868595)
               

               
               2-552, gnl|Mm7|chr13 (58225146-58225767)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-552, gnl|bosTau2|chr8 (43345127-43345687)
               

               
               2-552, gnl|Hg17|chr9 (84868016-84868595)
               

               
               2-552, gnl|Mm7|chr13 (58225146-58225767)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.236602)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               spc (0.113366)

	67-176, BovGen_07274 normal cattle brain Bos taurus cDNA clone (gb\|CO878949.1\|), blast E-value=3e-30, identity=90.91%
	67-176, LB02810.CR_P18 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV908398.1\|), blast E-value=3e-30, identity=90.91%

	2-552, gnl\|bosTau2\|chr8 (43345127-43345687)
	2-552, gnl\|Hg17\|chr9 (84868016-84868595)
	2-552, gnl\|Mm7\|chr13 (58225146-58225767)