Non-Coding RNA Search

Ss1.1-rspc029_i2.5

Sequence:


               
               ATAGAAGAGTATAATGACTTGATCCTATTCATTAGATTTATAAAAATACTATGAACTTAA
CTCTTTAAAACTGTTTTGATAGGTCATCTGTTGTTGGCACTATTTATATAAAAAACAGTG
GATTTGGAAAGATCTATGAAGCTTTATGATAATAGATACATTACTATTTTGGAACTATAT
GTATTTTCACAGGTAGTACTTGTCTCCACATCCCCCGACACTCATGCACAGTAAGATTAG
GCATCTTTGTGGTTGACATAGTCTAGGTAGCTTTTCCAGATAAGTCTCTTAAAAGCAAGG
AGTGCATTAACTAAATGGGCCAAAAGGTTCTTTTTCTCTGATGAGAGCTAGGTCCTTCCT
CAAAGTTTCTTAGGCTCCATTAAATTAAGTATAGAATATTCTCATTATTTTTGCTGCTGA
GCAACAGCCATATGATGCAGAGTTATGCAGTGCCTTCATATCTAAAACTTTTATACTGCA
CTTTTTAAAGCTTTTATTTTGAGGAAGGGAAAGGGGCATTTGTCTGAATATGGATTCTAA
GTTGTATATATTTCCTGTCATTCTAAAAAGTGACTTTGTGAAGCAAAATTTTGCTAAATG
TTAAACTTTGAAAAATTTAATATGCCAGATTAAAATATTGTCCACTAACTAGTTCACAGA
CTTTAAAAGTAAAAATACATCCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGAAGAGTATAATGACTTGATCCTATTCATTAGATTTATAAAAATACTATGAACTTAA
CTCTTTAAAACTGTTTTGATAGGTCATCTGTTGTTGGCACTATTTATATAAAAAACAGTG
GATTTGGAAAGATCTATGAAGCTTTATGATAATAGATACATTACTATTTTGGAACTATAT
GTATTTTCACAGGTAGTACTTGTCTCCACATCCCCCGACACTCATGCACAGTAAGATTAG
GCATCTTTGTGGTTGACATAGTCTAGGTAGCTTTTCCAGATAAGTCTCTTAAAAGCAAGG
AGTGCATTAACTAAATGGGCCAAAAGGTTCTTTTTCTCTGATGAGAGCTAGGTCCTTCCT
CAAAGTTTCTTAGGCTCCATTAAATTAAGTATAGAATATTCTCATTATTTTTGCTGCTGA
GCAACAGCCATATGATGCAGAGTTATGCAGTGCCTTCATATCTAAAACTTTTATACTGCA
CTTTTTAAAGCTTTTATTTTGAGGAAGGGAAAGGGGCATTTGTCTGAATATGGATTCTAA
GTTGTATATATTTCCTGTCATTCTAAAAAGTGACTTTGTGAAGCAAAATTTTGCTAAATG
TTAAACTTTGAAAAATTTAATATGCCAGATTAAAATATTGTCCACTAACTAGTTCACAGA
CTTTAAAAGTAAAAATACATCCGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               238-549, gnl|bosTau2|chr24 (20334962-20335288)
               

               
               238-549, gnl|Hg17|chr6 (119271486-119271772)
               

               
               238-549, gnl|Mm7|chr10 (53425809-53426107)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               238-549, gnl|bosTau2|chr24 (20334962-20335288)
               

               
               238-549, gnl|Hg17|chr6 (119271486-119271772)
               

               
               238-549, gnl|Mm7|chr10 (53425809-53426107)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               pro (0.512033)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

	238-549, gnl\|bosTau2\|chr24 (20334962-20335288)
	238-549, gnl\|Hg17\|chr6 (119271486-119271772)
	238-549, gnl\|Mm7\|chr10 (53425809-53426107)

	pro (0.512033)
	fhi (0.169578)
	eli (0.151814)
	lyg (0.133103)
	ova (0.129132)
	spc (0.113366)