Ss1.1-rspc029_m23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGAGTACTTACCAGAGTTCAATTTTTTTTTTTTTAAGTGAACCTGCACTAAAAATCAAA CTGAGGGGTAAGTGTAGCTCTCAGAACTCAACCCAAGGCAGAATCTCCATCATACTGTTT TCAAGATCATGTATAAAGAGGAAAAATAATGACATGTAGCCAAATGTGATTAGAATTTCT TCAAAGACTGTGTCACAAAGCTGTCTATATTAGACATGTTGGAGGGACCAGGAAATTTAA GACCCCAAATCCTTCATCTCTGGGCTGATGTCATCTTGTCATTGGTTGCTACTTTCGGAC GCTCTGTATCCACACTGAGGCAGGAGTTCTGGCTCTGCCTGCCCATCCAAGTCCCCCTTT GTACTGTCTGAGGTCGAGCACAGGTGTCTACACAGCAGCCACTGGTTGCCCAGAGATGGT GCTTCAGCAGACTTTGCCTTTTGAAGAGAATGTCGCGGGTTGAACAGGACACCAAAGGGT ACCATTTTGTTTTGTTTGTCAGTTTCCCAAATGGGTTCTCGAGGAATTGCCTGATCAGAT TGAATGTGCAGTAGCATTTTCCATTGCTGAAGTGAGGTAGCAGCTCTCTGTTGGTTGAAC ATTGTTTAAATCAGGAGTAGAAGAAAAAATAATACCTGTAGGCTTGCTCATAAAAAATTA TCTTCTAGAAGCAGGAGCTGTGTATCGGAAGTGCCCCGGTTTAATCCACACACTTAAAGA CGGTACATAACCCTACAACATATATATATATATATATATATATATATATATATATATATG GTATTCTTTGCTCTACTGTTTACATTGCAGATTGCTTATAATTTCAAGGAGTTATATTAT AAATAAAATGATGCACTTTAGAACGTTTTCTATTTTTGAAATCTGAACATGAATCATTTC ACATGACCAAAAATTGTATTTTTTAAAAGAAATACATGTCTAGTTTGTCCTTTTTGAGTA ATTATTCTCTTAACTAAGCTATACTATAAATCACATCATCGCCAGTTAACTTTCAAAGCA CATCTGTTTGAGTACTGTTTCGAAAAATACTAATATGCTCAGAACTTTAAAGAGGAAAAG GCTCTGTGTACGTGAGAAGCTACTAAATGTTTTGAAATCCATTGTTTCTGCCAAAGGTAA ATTAAGTACCAGATTTATTCAGGAATCCCCATTCCAAATTGTGCGACTGAATAAAACACC ACGTTACAGTACAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGAGTACTTACCAGAGTTCAATTTTTTTTTTTTTAAGTGAACCTGCACTAAAAATCAAA CTGAGGGGTAAGTGTAGCTCTCAGAACTCAACCCAAGGCAGAATCTCCATCATACTGTTT TCAAGATCATGTATAAAGAGGAAAAATAATGACATGTAGCCAAATGTGATTAGAATTTCT TCAAAGACTGTGTCACAAAGCTGTCTATATTAGACATGTTGGAGGGACCAGGAAATTTAA GACCCCAAATCCTTCATCTCTGGGCTGATGTCATCTTGTCATTGGTTGCTACTTTCGGAC GCTCTGTATCCACACTGAGGCAGGAGTTCTGGCTCTGCCTGCCCATCCAAGTCCCCCTTT GTACTGTCTGAGGTCGAGCACAGGTGTCTACACAGCAGCCACTGGTTGCCCAGAGATGGT GCTTCAGCAGACTTTGCCTTTTGAAGAGAATGTCGCGGGTTGAACAGGACACCAAAGGGT ACCATTTTGTTTTGTTTGTCAGTTTCCCAAATGGGTTCTCGAGGAATTGCCTGATCAGAT TGAATGTGCAGTAGCATTTTCCATTGCTGAAGTGAGGTAGCAGCTCTCTGTTGGTTGAAC ATTGTTTAAATCAGGAGTAGAAGAAAAAATAATACCTGTAGGCTTGCTCATAAAAAATTA TCTTCTAGAAGCAGGAGCTGTGTATCGGAAGTGCCCCGGTTTAATCCACACACTTAAAGA CGGTACATAACCCTACAACATATATATATATATATATATATATATATATATATATATATG GTATTCTTTGCTCTACTGTTTACATTGCAGATTGCTTATAATTTCAAGGAGTTATATTAT AAATAAAATGATGCACTTTAGAACGTTTTCTATTTTTGAAATCTGAACATGAATCATTTC ACATGACCAAAAATTGTATTTTTTAAAAGAAATACATGTCTAGTTTGTCCTTTTTGAGTA ATTATTCTCTTAACTAAGCTATACTATAAATCACATCATCGCCAGTTAACTTTCAAAGCA CATCTGTTTGAGTACTGTTTCGAAAAATACTAATATGCTCAGAACTTTAAAGAGGAAAAG GCTCTGTGTACGTGAGAAGCTACTAAATGTTTTGAAATCCATTGTTTCTGCCAAAGGTAA ATTAAGTACCAGATTTATTCAGGAATCCCCATTCCAAATTGTGCGACTGAATAAAACACC ACGTTACAGTACAAAAAAAAAAAAAAAAAAAAAAAA |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-497, gnl|bosTau2|chr6 (19319718-19320220) | |
| 1-497, gnl|canFam2|chr32 (14956420-14957258) | |
| 1-497, gnl|echTel1|scaffold_321869 (32745-31970) | |
| 1-497, gnl|hg17|chr4 (90005261-90006007) | |
| 1-497, gnl|Hg17|chr4 (90005902-90005402) | |
| 1-497, gnl|mm7|chr6 (58902619-58903316) | |
| 1-497, gnl|Mm7|chr6 (58903206-58902745) | |
| 1-497, gnl|monDom2|scaffold_32 (21096694-21095925) | |
| 1-497, gnl|oryCun1|scaffold_205206 (133620-132993) | |
| 1-497, gnl|panTro1|chr3 (106002491-106003237) | |
| 1-497, gnl|rheMac2|chr5 (81692417-81693171) | |
| 1-497, gnl|rn3|chr4 (88075294-88076006) | |
| 779-1218, gnl|bosTau2|chr6 (19320489-19320927) | |
| 779-1218, gnl|canFam2|chr32 (14955814-14956364) | |
| 779-1218, gnl|canFam2|chr32 (14955830-14956381) | |
| 779-1218, gnl|echTel1|scaffold_321869 (33382-32825) | |
| 779-1218, gnl|echTel1|scaffold_321869 (33371-32808) | |
| 779-1218, gnl|hg17|chr15 (85816216-85816761) | |
| 779-1218, gnl|Hg17|chr4 (90005115-90004686) | |
| 779-1218, gnl|hg17|chr8 (1802606-1803140) | |
| 779-1218, gnl|loxAfr1|scaffold_12086 (49114-48567) | |
| 779-1218, gnl|loxAfr1|scaffold_12086 (49100-48550) | |
| 779-1218, gnl|mm7|chr6 (58902032-58902565) | |
| 779-1218, gnl|mm7|chr6 (58902046-58902582) | |
| 779-1218, gnl|Mm7|chr6 (58902469-58902045) | |
| 779-1218, gnl|oryCun1|scaffold_205206 (134515-133987) | |
| 779-1218, gnl|oryCun1|scaffold_205206 (134487-133964) | |
| 779-1218, gnl|panTro1|chr16_random (28129043-28128497) | |
| 779-1218, gnl|panTro1|chr7 (1899622-1900150) | |
| 779-1218, gnl|rheMac2|chr7 (67095123-67095670) | |
| 779-1218, gnl|rheMac2|chr8 (1689382-1689902) | |
| 779-1218, gnl|rn3|chr4 (88074701-88075235) | |
| 779-1218, gnl|rn3|chr4 (88074715-88075253) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-497, gnl|bosTau2|chr6 (19319718-19320220) | |
| 1-497, gnl|canFam2|chr32 (14956420-14957258) | |
| 1-497, gnl|echTel1|scaffold_321869 (32745-31970) | |
| 1-497, gnl|hg17|chr4 (90005261-90006007) | |
| 1-497, gnl|Hg17|chr4 (90005902-90005402) | |
| 1-497, gnl|mm7|chr6 (58902619-58903316) | |
| 1-497, gnl|Mm7|chr6 (58903206-58902745) | |
| 1-497, gnl|monDom2|scaffold_32 (21096694-21095925) | |
| 1-497, gnl|oryCun1|scaffold_205206 (133620-132993) | |
| 1-497, gnl|panTro1|chr3 (106002491-106003237) | |
| 1-497, gnl|rheMac2|chr5 (81692417-81693171) | |
| 1-497, gnl|rn3|chr4 (88075294-88076006) | |
| 779-1218, gnl|bosTau2|chr6 (19320489-19320927) | |
| 779-1218, gnl|canFam2|chr32 (14955814-14956364) | |
| 779-1218, gnl|canFam2|chr32 (14955830-14956381) | |
| 779-1218, gnl|echTel1|scaffold_321869 (33382-32825) | |
| 779-1218, gnl|echTel1|scaffold_321869 (33371-32808) | |
| 779-1218, gnl|hg17|chr15 (85816216-85816761) | |
| 779-1218, gnl|Hg17|chr4 (90005115-90004686) | |
| 779-1218, gnl|hg17|chr8 (1802606-1803140) | |
| 779-1218, gnl|loxAfr1|scaffold_12086 (49114-48567) | |
| 779-1218, gnl|loxAfr1|scaffold_12086 (49100-48550) | |
| 779-1218, gnl|mm7|chr6 (58902032-58902565) | |
| 779-1218, gnl|mm7|chr6 (58902046-58902582) | |
| 779-1218, gnl|Mm7|chr6 (58902469-58902045) | |
| 779-1218, gnl|oryCun1|scaffold_205206 (134515-133987) | |
| 779-1218, gnl|oryCun1|scaffold_205206 (134487-133964) | |
| 779-1218, gnl|panTro1|chr16_random (28129043-28128497) | |
| 779-1218, gnl|panTro1|chr7 (1899622-1900150) | |
| 779-1218, gnl|rheMac2|chr7 (67095123-67095670) | |
| 779-1218, gnl|rheMac2|chr8 (1689382-1689902) | |
| 779-1218, gnl|rn3|chr4 (88074701-88075235) | |
| 779-1218, gnl|rn3|chr4 (88074715-88075253) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| ret (1.02987) | |
| lin (0.728014) | |
| cbe (0.478469) | |
| cut (0.339847) | |
| nje (0.33184) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| rec (0.17307) | |
| cki (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| cst (0.140036) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ova (0.129132) | |
| tra (0.123092) | |
| clu (0.119646) | |
| jca (0.11396) | |
| spc (0.113366) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (1.02987) | |
| lin (0.728014) | |
| cbe (0.478469) | |
| cut (0.339847) | |
| nje (0.33184) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| rec (0.17307) | |
| cki (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| cst (0.140036) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ova (0.129132) | |
| tra (0.123092) | |
| clu (0.119646) | |
| jca (0.11396) | |
| spc (0.113366) |