Ss1.1-rspc029_n17.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAAGGAGTCTGGAGAGACCAGGAACCTTCTAGCTGAACAAAGTCAGCCGCAAAGCAGA CTAGCCAGCCGTCTACAACTGGAGTCAGAATTCCAAAGACATGGGCTTGTTAGAGTGCTG CGCGAGATGCCTCGTAGGGGCCCCCTTTGCTTCCCTGGTGGCCACTGGATTGTGTTTCTT TGGGGTGGCACTCTTCTGTGGCTGTGGACATGAAGCACTCACTGGCACAGAAAAGCTAAT TGAGACCTATTTCTCCAAAAATTACCAGGACTACGAGTATCTCATCAATGTGATCCATGC TTTCCAGTATGTCATCTATGGAACTGCCTCTTTCTTCTTCCTTTATGGGGCCCTCCTGCT GGCTGAGGGCTTCTACACCACCGGCGCAGTCAGGCAGATCTTTGGCGACTACAAGACCAC CATCTGCGGGAAGGGCCTGAGTGCAACGGTAACAGGGGGCCAGAAGGGGAGGGGTTCCAG AGGCCAACATCAAGCTCATTCTTTGGAGCGGGTGTGTCATTGTTTGGGAAAATGGCTAGG ACATCCCGACAAGTTTGTGGGCATCACCTATGCCCTGACCGTTGTGTGGCTCCTAGTGTT TGCCTGCTCTGCTGTGCCTGTGTACATTTACTTCAACACCTGGACCACTTGCCAGTCTAT TGCCTTCCCCAGCAAGACCTCTGCCAGCATAGGCAGTCTCTGTGCTGATGCCAGAATGTA TGGTGTTCTCCCATGGAATGCTTTCCCTGGCAAGGTGTGTGGCTCCAACCTTCTGTCCAT CTGCAAAACAGCTGAGTTCCAAATGACCTTCCACCTGTTTATTGCTGCCTTTGTGGGGGC TGCAGCCACACTGGTTTCCCTGCTCACCTTCATGATTGCTGCCACTTACAACTTTGCCGT CCTGAAACTCATGGGCCGAGGCACCAAGTTCTGATTTCCTGTAGAAATTTCCCTTTCTCT AATAGCGAGGCTCTAACCACACAGCCTACAATACTGCGTCTCCCACGTTAACTCTTTGCC TTTGCCACTGACTGGCCCTCTTCTTACTTGACAAGTGTAACAAGAAAGGAGGGTCTTGTG GTGATTAACGTCTCTCTGTGAACTCTCCCCTTTTATGTACCTCTTTTAGTCATTTTGCTT CATAGCTGGTTCCTGCTAGAAATGGGAAATGCTTAAGATGGTGACTCCCCACCTGCAAGT CACAGAGAAGTGGAGGCTCTAATTCAATTTTCAAGCATCTCTTGAGGACCAGGAAGTGTT TTCATCTCAAAGGGCACTTCCACTGATGGAGACAAAGTGGAAAGGAAGATGCTCAGGTAG AGAGAAGGGATGTACCTGGTCCCCTTGCCATCTTGGGGGCCAACTGTATTCTCCTTGGTG TACAAAACAGAAAACTCACTCCTGTCTCCCTATTTCCACTGAAGATAGAAGAAAAAAAAG AATGCCAGCAAAACAGTAAGAGCATTTGCCCAAATCTACCTATTGCAGCTGGGAGAAGGG GGTCAAAGCAAGGATCTTTCTCCTATAGAAAGAGAGCACTGACCCCAATGGCAATGGACT ATTTAAACCCTAACTCAGCCAACCTTACTTATAGCATAAGGGAGCATAGTGTCTGTGTAG ACAAAGGGGGCACCTGGCCTTATACCTCGTTAGAGAAGAGAAACAGGATGTTGTCTGCAT CTTCTCCCTCCCTTCTCCTTGATAACAGCTACCATGACAACCCTGTGGTTTCCAAGGAGC TGAGGATAGAGAGAAACTAGCTCATGTGAAAAAAAGACTGGCTTCAGGAGTAGCGGTTGC TAGTGTATAACGGTATAAACTGAGCCAGCCCTCTGGTAGACACAGGATAGATAACTCTTT GGACAGCATGTCATGTTTCTGTTAATTAGTTGTGTACTTTGGCCTCTGTCTTATCTTCAC AATGGTGCTCTTTTCATGGGGGTATTAGCCATTTGGTCATAACAGGTGATTTGAAGATCT TGATTTGTTTCAGAATGATGCACATTTCACATTTTCCAGTTTGTCTATCACCTGATTGGG GATTGTACCAGAAATGCCTGGAGAATGATTCTTTGATCATGATTATTTAACAAGTGAAAA TTGGACATTAAACACCACAAATGATATGTAAAAAAAGCTAGTTCCTTGTATCTATTGGGG TTTTCTACCAATTATCCTGTCCTTTACAGAAACAGATTTGGTGAATTTGAACCTCAATTT CAAAAACCTATTTGATCATTCTTTCCAGCTGGTGGGAGATGATTTGATTTAGCAATGTTA CCTTGGAGTGTTAAAGAGTCAGGTTTAATGTACAGATCATCCTCTCCTGTTGCAGATCAT ATAAGCAAATCTAACAGCCATCAGCTATTCAGTTGGTAAGCTTTCATAGAAAAGGAAAGG TGGAAAGAATTTGAAACCTGAGTGGCTCCCAGGTTTCAGTCTTCCTGGATTTTACCTTTG GGTTAAAAAATATAAAGCTGATTGGTCTCTAGTGAAGGAAAGATTTTACAGGTATGACTC TAGGTGGTTCTTTTGTTGTAAAGAGTTGTTTTGTTTTCTCCCCCAAAGTGGTTTCAGCAA TGTTTAAGGAGATGTAAGATCTTTACAAAAAGACCCTTGATACTCGCTTTCAGACCAGTA TACAAGAGAAGCTTCCAGGCTGCATAGAGGGAGGAGATGGGAAAGGTTCCATAAGAAACC AATCAAGATCAAGGAAAGTGAAGTAATCCATACCTTGTGTTTTTTTTTTTTTTTGATTTA ATAAAATAACAAATAACCAACCCTTCCCTGGAGACCTCCTATGCATATATCCACACATAG ACACACACGAAGAGAGTTAATCAACTGAAAGTGTTTCCTTCATTTCTGATACAGAATTTC AATTTTAACCCACATAAAGGATAAACTTTTAGAAACTTATCTTACAAAATGTATTTTATA AAATTAAAGAAAATAAAATTAAGAATGTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAAGGAGTCTGGAGAGACCAGGAACCTTCTAGCTGAACAAAGTCAGCCGCAAAGCAGA CTAGCCAGCCGTCTACAACTGGAGTCAGAATTCCAAAGACATGGGCTTGTTAGAGTGCTG CGCGAGATGCCTCGTAGGGGCCCCCTTTGCTTCCCTGGTGGCCACTGGATTGTGTTTCTT TGGGGTGGCACTCTTCTGTGGCTGTGGACATGAAGCACTCACTGGCACAGAAAAGCTAAT TGAGACCTATTTCTCCAAAAATTACCAGGACTACGAGTATCTCATCAATGTGATCCATGC TTTCCAGTATGTCATCTATGGAACTGCCTCTTTCTTCTTCCTTTATGGGGCCCTCCTGCT GGCTGAGGGCTTCTACACCACCGGCGCAGTCAGGCAGATCTTTGGCGACTACAAGACCAC CATCTGCGGGAAGGGCCTGAGTGCAACGGTAACAGGGGGCCAGAAGGGGAGGGGTTCCAG AGGCCAACATCAAGCTCATTCTTTGGAGCGGGTGTGTCATTGTTTGGGAAAATGGCTAGG ACATCCCGACAAGTTTGTGGGCATCACCTATGCCCTGACCGTTGTGTGGCTCCTAGTGTT TGCCTGCTCTGCTGTGCCTGTGTACATTTACTTCAACACCTGGACCACTTGCCAGTCTAT TGCCTTCCCCAGCAAGACCTCTGCCAGCATAGGCAGTCTCTGTGCTGATGCCAGAATGTA TGGTGTTCTCCCATGGAATGCTTTCCCTGGCAAGGTGTGTGGCTCCAACCTTCTGTCCAT CTGCAAAACAGCTGAGTTCCAAATGACCTTCCACCTGTTTATTGCTGCCTTTGTGGGGGC TGCAGCCACACTGGTTTCCCTGCTCACCTTCATGATTGCTGCCACTTACAACTTTGCCGT CCTGAAACTCATGGGCCGAGGCACCAAGTTCTGATTTCCTGTAGAAATTTCCCTTTCTCT AATAGCGAGGCTCTAACCACACAGCCTACAATACTGCGTCTCCCACGTTAACTCTTTGCC TTTGCCACTGACTGGCCCTCTTCTTACTTGACAAGTGTAACAAGAAAGGAGGGTCTTGTG GTGATTAACGTCTCTCTGTGAACTCTCCCCTTTTATGTACCTCTTTTAGTCATTTTGCTT CATAGCTGGTTCCTGCTAGAAATGGGAAATGCTTAAGATGGTGACTCCCCACCTGCAAGT CACAGAGAAGTGGAGGCTCTAATTCAATTTTCAAGCATCTCTTGAGGACCAGGAAGTGTT TTCATCTCAAAGGGCACTTCCACTGATGGAGACAAAGTGGAAAGGAAGATGCTCAGGTAG AGAGAAGGGATGTACCTGGTCCCCTTGCCATCTTGGGGGCCAACTGTATTCTCCTTGGTG TACAAAACAGAAAACTCACTCCTGTCTCCCTATTTCCACTGAAGATAGAAGAAAAAAAAG AATGCCAGCAAAACAGTAAGAGCATTTGCCCAAATCTACCTATTGCAGCTGGGAGAAGGG GGTCAAAGCAAGGATCTTTCTCCTATAGAAAGAGAGCACTGACCCCAATGGCAATGGACT ATTTAAACCCTAACTCAGCCAACCTTACTTATAGCATAAGGGAGCATAGTGTCTGTGTAG ACAAAGGGGGCACCTGGCCTTATACCTCGTTAGAGAAGAGAAACAGGATGTTGTCTGCAT CTTCTCCCTCCCTTCTCCTTGATAACAGCTACCATGACAACCCTGTGGTTTCCAAGGAGC TGAGGATAGAGAGAAACTAGCTCATGTGAAAAAAAGACTGGCTTCAGGAGTAGCGGTTGC TAGTGTATAACGGTATAAACTGAGCCAGCCCTCTGGTAGACACAGGATAGATAACTCTTT GGACAGCATGTCATGTTTCTGTTAATTAGTTGTGTACTTTGGCCTCTGTCTTATCTTCAC AATGGTGCTCTTTTCATGGGGGTATTAGCCATTTGGTCATAACAGGTGATTTGAAGATCT TGATTTGTTTCAGAATGATGCACATTTCACATTTTCCAGTTTGTCTATCACCTGATTGGG GATTGTACCAGAAATGCCTGGAGAATGATTCTTTGATCATGATTATTTAACAAGTGAAAA TTGGACATTAAACACCACAAATGATATGTAAAAAAAGCTAGTTCCTTGTATCTATTGGGG TTTTCTACCAATTATCCTGTCCTTTACAGAAACAGATTTGGTGAATTTGAACCTCAATTT CAAAAACCTATTTGATCATTCTTTCCAGCTGGTGGGAGATGATTTGATTTAGCAATGTTA CCTTGGAGTGTTAAAGAGTCAGGTTTAATGTACAGATCATCCTCTCCTGTTGCAGATCAT ATAAGCAAATCTAACAGCCATCAGCTATTCAGTTGGTAAGCTTTCATAGAAAAGGAAAGG TGGAAAGAATTTGAAACCTGAGTGGCTCCCAGGTTTCAGTCTTCCTGGATTTTACCTTTG GGTTAAAAAATATAAAGCTGATTGGTCTCTAGTGAAGGAAAGATTTTACAGGTATGACTC TAGGTGGTTCTTTTGTTGTAAAGAGTTGTTTTGTTTTCTCCCCCAAAGTGGTTTCAGCAA TGTTTAAGGAGATGTAAGATCTTTACAAAAAGACCCTTGATACTCGCTTTCAGACCAGTA TACAAGAGAAGCTTCCAGGCTGCATAGAGGGAGGAGATGGGAAAGGTTCCATAAGAAACC AATCAAGATCAAGGAAAGTGAAGTAATCCATACCTTGTGTTTTTTTTTTTTTTTGATTTA ATAAAATAACAAATAACCAACCCTTCCCTGGAGACCTCCTATGCATATATCCACACATAG ACACACACGAAGAGAGTTAATCAACTGAAAGTGTTTCCTTCATTTCTGATACAGAATTTC AATTTTAACCCACATAAAGGATAAACTTTTAGAAACTTATCTTACAAAATGTATTTTATA AAATTAAAGAAAATAAAATTAAGAATGTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 1021-1338, - strand, RNAz p=0.994164 | |
| 1418-1614, - strand, RNAz p=0.940115 | |
| 1678-1796, - strand, RNAz p=0.514874 | |
| 2372-2467, - strand, RNAz p=0.977923 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1021-1338, - strand, RNAz p=0.994164 | |
| 1418-1614, - strand, RNAz p=0.940115 | |
| 1678-1796, - strand, RNAz p=0.514874 | |
| 2372-2467, - strand, RNAz p=0.977923 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 292-553, gnl|bosTau2|chrX (16430138-16429877) | |
| 292-553, gnl|canFam2|chrX (80268442-80268630) | |
| 292-553, gnl|danRer3|chr22 (36254643-36254826) | |
| 292-553, gnl|dasNov1|scaffold_12588 (17319-17507) | |
| 292-553, gnl|echTel1|scaffold_310769 (85200-85386) | |
| 292-553, gnl|fr1|chrUn (233582767-233582929) | |
| 292-553, gnl|galGal2|chrUn (15937368-15937186) | |
| 292-553, gnl|hg17|chrX (102847531-102847719) | |
| 292-553, gnl|Hg17|chrX (102847539-102847800) | |
| 292-553, gnl|loxAfr1|scaffold_19003 (19790-19602) | |
| 292-553, gnl|mm7|chrX (131551158-131551346) | |
| 292-553, gnl|Mm7|chrX (131551166-131551427) | |
| 292-553, gnl|monDom2|scaffold_146 (1347506-1347318) | |
| 292-553, gnl|oryCun1|scaffold_198289 (129816-130004) | |
| 292-553, gnl|panTro1|chrX (106373177-106373365) | |
| 292-553, gnl|rheMac2|chrX (102340809-102340997) | |
| 292-553, gnl|rn3|chrX (124571058-124571246) | |
| 292-553, gnl|tetNig1|chr2 (10314629-10314775) | |
| 292-553, gnl|xenTro1|scaffold_561 (592610-592419) | |
| 862-2982, gnl|bosTau2|chrX (16425878-16423755) | |
| 862-2982, gnl|Hg17|chrX (102851599-102853696) | |
| 862-2982, gnl|Mm7|chrX (131555252-131557552) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 292-553, gnl|bosTau2|chrX (16430138-16429877) | |
| 292-553, gnl|canFam2|chrX (80268442-80268630) | |
| 292-553, gnl|danRer3|chr22 (36254643-36254826) | |
| 292-553, gnl|dasNov1|scaffold_12588 (17319-17507) | |
| 292-553, gnl|echTel1|scaffold_310769 (85200-85386) | |
| 292-553, gnl|fr1|chrUn (233582767-233582929) | |
| 292-553, gnl|galGal2|chrUn (15937368-15937186) | |
| 292-553, gnl|hg17|chrX (102847531-102847719) | |
| 292-553, gnl|Hg17|chrX (102847539-102847800) | |
| 292-553, gnl|loxAfr1|scaffold_19003 (19790-19602) | |
| 292-553, gnl|mm7|chrX (131551158-131551346) | |
| 292-553, gnl|Mm7|chrX (131551166-131551427) | |
| 292-553, gnl|monDom2|scaffold_146 (1347506-1347318) | |
| 292-553, gnl|oryCun1|scaffold_198289 (129816-130004) | |
| 292-553, gnl|panTro1|chrX (106373177-106373365) | |
| 292-553, gnl|rheMac2|chrX (102340809-102340997) | |
| 292-553, gnl|rn3|chrX (124571058-124571246) | |
| 292-553, gnl|tetNig1|chr2 (10314629-10314775) | |
| 292-553, gnl|xenTro1|scaffold_561 (592610-592419) | |
| 862-2982, gnl|bosTau2|chrX (16425878-16423755) | |
| 862-2982, gnl|Hg17|chrX (102851599-102853696) | |
| 862-2982, gnl|Mm7|chrX (131555252-131557552) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| spc (23.4667) | |
| fbs (18.5867) | |
| fhi (7.46142) | |
| hyp (6.71333) | |
| fco (4.55903) | |
| fce (2.44432) | |
| cbe (0.956938) | |
| eli (0.455443) | |
| fcc (0.39557) | |
| nmm (0.265604) | |
| ret (0.257467) | |
| tes (0.207814) | |
| fli (0.202881) | |
| cbr (0.127975) | |
| pgl (0.118483) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (23.4667) | |
| fbs (18.5867) | |
| fhi (7.46142) | |
| hyp (6.71333) | |
| fco (4.55903) | |
| fce (2.44432) | |
| cbe (0.956938) | |
| eli (0.455443) | |
| fcc (0.39557) | |
| nmm (0.265604) | |
| ret (0.257467) | |
| tes (0.207814) | |
| fli (0.202881) | |
| cbr (0.127975) | |
| pgl (0.118483) |