Non-Coding RNA Search

Ss1.1-rspc030_a16.5

Sequence:


               
               CCCTAATTCCTAGCAAGGCTTAAGGATGGTCCCTCCCGATCAAATTCTTCTCATTGTGGA
AAGTCATGCCCAGAAGCCTTCACGTATGAAGTTACATTAATTACTTAATCAATGGAATTC
TTAGAAGACGAGATAAGCTTCATGTACGTTGTCACTTCTCTTTCTGCCCTGTTCTGCCCT
GCCGCCCCAGTCCTAGCTTTTCAATCTACCATCTGAAAGGGTTCTTTAAGCCCTGACACC
TGTCTAGCAAACGGAGAGCCTAATTTACCAAAATGAAACTTGTAAATTTTTGTGTCCTTG
TATGTAAGTTTACTTTTTATTGAGGGAAGATTCTAGATAATGACGAATGACGATTACGAA
ATGTATTTTACTCCTGTGATTAGGTCATAACTCGCATGTCCAGGCCCCTCTGGGAAAGGG
TTAGAGCTCCGCCTGGGATGGCCAACATTCACTTGTTCAGGTTCCTTAGTCAAAATTCAG
TTTTAGAACTACTTGTACTCAGTAACAAAAATCATTTTCTTTCTTTCTTTTTTTCCCCCT
TTCTGTTGTTGTGGAAAAGCGTGAATTTGTTATTAAGCGTTTGATTTTCTGTGTCCTTAA
GTACTGCCTAAAGATAAAAGCAAATTTTAAACTGGCAATTAAGAAAAAGAACTATTTTAG
CTGTGAAGAATTTAGTAGATTTTGTTAGATTAGGGAGGCCTTACAGACTGACTTGACTTA
AAGAGGACGCGTCACTCACTGTCAGTGTGGTGTGGGCTTTATTTGCTTCAATACCTTCAT
TTGTATAGTATGTCTCACTTGAAATTGCTTTGTATACATTTTGTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTAATTCCTAGCAAGGCTTAAGGATGGTCCCTCCCGATCAAATTCTTCTCATTGTGGA
AAGTCATGCCCAGAAGCCTTCACGTATGAAGTTACATTAATTACTTAATCAATGGAATTC
TTAGAAGACGAGATAAGCTTCATGTACGTTGTCACTTCTCTTTCTGCCCTGTTCTGCCCT
GCCGCCCCAGTCCTAGCTTTTCAATCTACCATCTGAAAGGGTTCTTTAAGCCCTGACACC
TGTCTAGCAAACGGAGAGCCTAATTTACCAAAATGAAACTTGTAAATTTTTGTGTCCTTG
TATGTAAGTTTACTTTTTATTGAGGGAAGATTCTAGATAATGACGAATGACGATTACGAA
ATGTATTTTACTCCTGTGATTAGGTCATAACTCGCATGTCCAGGCCCCTCTGGGAAAGGG
TTAGAGCTCCGCCTGGGATGGCCAACATTCACTTGTTCAGGTTCCTTAGTCAAAATTCAG
TTTTAGAACTACTTGTACTCAGTAACAAAAATCATTTTCTTTCTTTCTTTTTTTCCCCCT
TTCTGTTGTTGTGGAAAAGCGTGAATTTGTTATTAAGCGTTTGATTTTCTGTGTCCTTAA
GTACTGCCTAAAGATAAAAGCAAATTTTAAACTGGCAATTAAGAAAAAGAACTATTTTAG
CTGTGAAGAATTTAGTAGATTTTGTTAGATTAGGGAGGCCTTACAGACTGACTTGACTTA
AAGAGGACGCGTCACTCACTGTCAGTGTGGTGTGGGCTTTATTTGCTTCAATACCTTCAT
TTGTATAGTATGTCTCACTTGAAATTGCTTTGTATACATTTTGTAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-828, gnl|bosTau2|chr23 (12951260-12952087)
               

               
               1-828, gnl|Hg17|chr6 (42943249-42944086)
               

               
               1-828, gnl|Mm7|chr17 (44928970-44928075)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-828, gnl|bosTau2|chr23 (12951260-12952087)
               

               
               1-828, gnl|Hg17|chr6 (42943249-42944086)
               

               
               1-828, gnl|Mm7|chr17 (44928970-44928075)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-828, gnl\|bosTau2\|chr23 (12951260-12952087)
	1-828, gnl\|Hg17\|chr6 (42943249-42944086)
	1-828, gnl\|Mm7\|chr17 (44928970-44928075)

	cag (0.151194)
	hlv (0.139256)
	ova (0.129132)
	tra (0.123092)
	spc (0.113366)