Non-Coding RNA Search

Ss1.1-rspc030_d3.5

Sequence:


               
               AAAAAAAATTTATGAAATTACAACCGCCCAGCACAATTTGCTGTAGAATCTACCTAGGTA
GATGACCCCTGGGCATACATTGGTTTTGATGGCTATTTACCCATTGCGTTTAACTCTCCA
CACAAAGGGCATCAGCAAGCCTTCAAATACATCAGGGGAGTCTATTTCTGACCACTGATG
TACACTGAATTAGAATATCTTCGAATTATATAAAAGTCCCAGTTTCAGCCACAGTTTAGC
CAAAAATAAGGTAAAAACTTGAAAAAGAAGTGGAATGAATCAGTATTTAATCTCAGATTA
CATTTTTTCAAACAAAAGAAATCACATTTTCACTTAGTAAATAATGAGACAGCATGTAGA
GGAAGGAGCCCTAGGCTGAAAGTCAAGGCAGCTGAATGTCAGGCCTCTGTCACTATCGGC
ATGACCTTGGCCTCAGTACTCTTACCTGTTAAATAGAAAGTTCCATTAGGCAGTTTCTAA
GGTCCCTTCTAACTTTGACAAGTTGTGATGAGATCTTTTTATTTGATGTTCTGAAGGGAT
AACATGCTTTGAAGTAAGTCTCAGTAAGGGGATACTTTAGAACGTCTTTCTTCTCCTTAC
TCTTACAGTGTTCTTACAGTTCTCTGAACATCATGAGAACCTTGTGTTTGTTCTGATTCC
TTCCTCTTTCACTGATGCGAAATATCCAATTGATATCAAACTGTCAACCTACCAAAAAAG
ATATTGTGGCTTGTGGGCATTGCTGTCTTGTTTTGATATGTTCTTGTAGTGACTGCCCAT
TGGCCTGAAAATACTCATTGTAAGCCTAAAAAAAAAAATCATTTTTCTCTTTCCTACTGT
TTCTTCTGCTTGTTGAAGAATCAAATGAAATACTGTATGTGAAAGCACCTTGTAAATTGT
AGCCTATCAATGTAAAGTGTTAAGGTGTTGTTATTTCATTAATTACTCCTTTGTTTAGAA
TGGAATTTCCTATGCGCCTCTGTAGCTAGGAAATGCTGAAAACAACTGTGTTTTTTAATT
AATCAGTAACTGCAAAATTAAAGTATCTTCAAAGGATAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAATTTATGAAATTACAACCGCCCAGCACAATTTGCTGTAGAATCTACCTAGGTA
GATGACCCCTGGGCATACATTGGTTTTGATGGCTATTTACCCATTGCGTTTAACTCTCCA
CACAAAGGGCATCAGCAAGCCTTCAAATACATCAGGGGAGTCTATTTCTGACCACTGATG
TACACTGAATTAGAATATCTTCGAATTATATAAAAGTCCCAGTTTCAGCCACAGTTTAGC
CAAAAATAAGGTAAAAACTTGAAAAAGAAGTGGAATGAATCAGTATTTAATCTCAGATTA
CATTTTTTCAAACAAAAGAAATCACATTTTCACTTAGTAAATAATGAGACAGCATGTAGA
GGAAGGAGCCCTAGGCTGAAAGTCAAGGCAGCTGAATGTCAGGCCTCTGTCACTATCGGC
ATGACCTTGGCCTCAGTACTCTTACCTGTTAAATAGAAAGTTCCATTAGGCAGTTTCTAA
GGTCCCTTCTAACTTTGACAAGTTGTGATGAGATCTTTTTATTTGATGTTCTGAAGGGAT
AACATGCTTTGAAGTAAGTCTCAGTAAGGGGATACTTTAGAACGTCTTTCTTCTCCTTAC
TCTTACAGTGTTCTTACAGTTCTCTGAACATCATGAGAACCTTGTGTTTGTTCTGATTCC
TTCCTCTTTCACTGATGCGAAATATCCAATTGATATCAAACTGTCAACCTACCAAAAAAG
ATATTGTGGCTTGTGGGCATTGCTGTCTTGTTTTGATATGTTCTTGTAGTGACTGCCCAT
TGGCCTGAAAATACTCATTGTAAGCCTAAAAAAAAAAATCATTTTTCTCTTTCCTACTGT
TTCTTCTGCTTGTTGAAGAATCAAATGAAATACTGTATGTGAAAGCACCTTGTAAATTGT
AGCCTATCAATGTAAAGTGTTAAGGTGTTGTTATTTCATTAATTACTCCTTTGTTTAGAA
TGGAATTTCCTATGCGCCTCTGTAGCTAGGAAATGCTGAAAACAACTGTGTTTTTTAATT
AATCAGTAACTGCAAAATTAAAGTATCTTCAAAGGATAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-115, - strand, RNAz p=0.564517

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-115, - strand, RNAz p=0.564517

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1064, gnl|bosTau2|chr3 (46054654-46055696)
               

               
               1-1064, gnl|Hg17|chr1 (84415131-84416202)
               

               
               1-1064, gnl|Mm7|chr3 (146629148-146628130)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1064, gnl|bosTau2|chr3 (46054654-46055696)
               

               
               1-1064, gnl|Hg17|chr1 (84415131-84416202)
               

               
               1-1064, gnl|Mm7|chr3 (146629148-146628130)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               fhi (0.508733)
               

               
               ecc (0.345105)
               

               
               fco (0.314416)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.508733)
               

               
               ecc (0.345105)
               

               
               fco (0.314416)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	1-1064, gnl\|bosTau2\|chr3 (46054654-46055696)
	1-1064, gnl\|Hg17\|chr1 (84415131-84416202)
	1-1064, gnl\|Mm7\|chr3 (146629148-146628130)

	fhi (0.508733)
	ecc (0.345105)
	fco (0.314416)
	sug (0.254582)
	ece (0.229305)
	hea (0.204499)
	gul (0.177588)
	fbs (0.175346)
	nje (0.16592)
	ski (0.146735)
	spl (0.143184)
	hyp (0.142837)
	thg (0.126791)
	tra (0.123092)
	cbl (0.114797)
	spc (0.113366)