Ss1.1-rspc030_d5.5
|
TTCACAATCAGCCACGCAGCAGCCTGTAACTGCTGACAAACAGCAAGGTCATGAACCTGT
TTCCCCTCGAAGTCTTCAGCGCTCAAATAGCCAGAGAAGTCCATCACCTGGTCCAAATCA
TACTTCTAGTAGTAATGCATCAACTGCAACAGTTGTACCACAGAATCCATCTGCCCGACC
TGCGTGTTCATTAACACCCACGCTGGCAGCACACTTCAATGAAAATCTCATTAAGCACGT
TCAAGGATGGCCTGCAGATCATGCAGAGAAGCAGGCATCGAGATTGCGAGAAGAAGCCCA
TAACATGGGAAGCGTTCACATGTCAGAAATTTGTACTGAATTGAAAAATTTAAGATCTTT
AGTCCGAGTATGTGAAATTCAAGCAACTTTGCGAGAGCAAAGGATACTATTTTTGAGACA
ACAAATTAAGGAACTTGAAAAGCTAAAAAATCAGAATTCCTTCATGGTGTGAAGATGTGA
ATAATTGCACACAGAGTTGAGTACAGGAACTATAAATCTTGCCCAATCTTAACATTTTTG
AGCTGCATTTAAGTAGACTTTGGACCGTTAAGCTGGGCAAAGGAAATGACAAGGGGATGG
GGTCTGTGAGATTAAATTCAGGGGAGAGATACAAGATTGATTTGTAAAACCCTTGAAATG
TAGATTCTTGTAGATGTATTCTTCACGTTGTAAATATGTTTTGTAGAGTGAAGCCATGGG
AAGCCATGTGTAACAGAGCTTAGACATCCAAAACTAATCAATGCTGAGGTGGCTAAATAC
CTAGCCTTTTACATGTAAACCTGTCTGCAAAATTAGCTTTTTTAAAAAAGAAAATTTGGG
GGGTTAATTTATCATTCAGAAATCTTGCATTTTCAAAAAATTACAGTGCAAGCGCCAGGC
GATCTGTGTCTGAGGATGCAACCTTGAACCATATGGGCAGTGTACAAGATATCATGAAAC
AACGGTCCCCACACTTGCACCTGATCAAGAGCAGTGCTTCTTCATTTGTTTTGCAGAGAA
ATGTTTTTCATTTCCCGTGTGTTCCATTTCCCTCTGAAATCCTTGATCTGATTTTATCCA
TTTTTTTAAGGCTCCTCTTTTTCTCCTTTCTTAAGGCACTGTTGCTATGGCACTTTTCTA
TAATCTTTTCATTCCTGTGTACAGTAGCTTAAAAATTGCAGTGATTGAGCATAACCCACT
TGTTTGTATAAATTATTGAAATCCATTTGCACCACGTAAGAATGGACTTAAGTACTGCTG
GGCATGTGTGCTGAAAGTACAGTGATTGCTCAGATGTAAGGAAATGGCCCAATGAACATG
GTTGTGGGAGGGGAAAGAGGAAACAAAGCTAGTCAGATGTGAATTGTACCTGTTGTAATA
AACATGTTAAAACAAACAAAAATTGTTATTTTTCTTTTCTTTGGTCAATGCATATTAGAA
TTTGAACTACCTGGGGATTCTTTTTCAGAACTATTCTTGTTGAACATTTATACTTAATTG
AAATAATTCCTTAAGGGCGGTTTTGTTTAAAGCATATTAACAGGAAGTTGTGTGTAAGAA
TATTTAATGAAATATGAAATTCAACAAGAATGATTAAGTCACTTCCCAAGTGGTTGTCAT
TTGTTAAACCCTGGTTACCTGTCTTGCTATCACGACCTTTCATTTTGAAGGATGTCTGTG
TTGTAGCTATAACTGTTCAAGTCTGGTGCTGACTGCTGTTCTTAGCCATCACAAAACGCT
AAATTTGTGTAATTGGAGCTTCCTGCTGTTATCTGGAAATGGTGGGAAAGCTCAGCTTTG
TATATTGTTTCCTAAAGTATATTAAAATAAAAAAAGAAACTATTGCTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTCACAATCAGCCACGCAGCAGCCTGTAACTGCTGACAAACAGCAAGGTCATGAACCTGT
TTCCCCTCGAAGTCTTCAGCGCTCAAATAGCCAGAGAAGTCCATCACCTGGTCCAAATCA
TACTTCTAGTAGTAATGCATCAACTGCAACAGTTGTACCACAGAATCCATCTGCCCGACC
TGCGTGTTCATTAACACCCACGCTGGCAGCACACTTCAATGAAAATCTCATTAAGCACGT
TCAAGGATGGCCTGCAGATCATGCAGAGAAGCAGGCATCGAGATTGCGAGAAGAAGCCCA
TAACATGGGAAGCGTTCACATGTCAGAAATTTGTACTGAATTGAAAAATTTAAGATCTTT
AGTCCGAGTATGTGAAATTCAAGCAACTTTGCGAGAGCAAAGGATACTATTTTTGAGACA
ACAAATTAAGGAACTTGAAAAGCTAAAAAATCAGAATTCCTTCATGGTGTGAAGATGTGA
ATAATTGCACACAGAGTTGAGTACAGGAACTATAAATCTTGCCCAATCTTAACATTTTTG
AGCTGCATTTAAGTAGACTTTGGACCGTTAAGCTGGGCAAAGGAAATGACAAGGGGATGG
GGTCTGTGAGATTAAATTCAGGGGAGAGATACAAGATTGATTTGTAAAACCCTTGAAATG
TAGATTCTTGTAGATGTATTCTTCACGTTGTAAATATGTTTTGTAGAGTGAAGCCATGGG
AAGCCATGTGTAACAGAGCTTAGACATCCAAAACTAATCAATGCTGAGGTGGCTAAATAC
CTAGCCTTTTACATGTAAACCTGTCTGCAAAATTAGCTTTTTTAAAAAAGAAAATTTGGG
GGGTTAATTTATCATTCAGAAATCTTGCATTTTCAAAAAATTACAGTGCAAGCGCCAGGC
GATCTGTGTCTGAGGATGCAACCTTGAACCATATGGGCAGTGTACAAGATATCATGAAAC
AACGGTCCCCACACTTGCACCTGATCAAGAGCAGTGCTTCTTCATTTGTTTTGCAGAGAA
ATGTTTTTCATTTCCCGTGTGTTCCATTTCCCTCTGAAATCCTTGATCTGATTTTATCCA
TTTTTTTAAGGCTCCTCTTTTTCTCCTTTCTTAAGGCACTGTTGCTATGGCACTTTTCTA
TAATCTTTTCATTCCTGTGTACAGTAGCTTAAAAATTGCAGTGATTGAGCATAACCCACT
TGTTTGTATAAATTATTGAAATCCATTTGCACCACGTAAGAATGGACTTAAGTACTGCTG
GGCATGTGTGCTGAAAGTACAGTGATTGCTCAGATGTAAGGAAATGGCCCAATGAACATG
GTTGTGGGAGGGGAAAGAGGAAACAAAGCTAGTCAGATGTGAATTGTACCTGTTGTAATA
AACATGTTAAAACAAACAAAAATTGTTATTTTTCTTTTCTTTGGTCAATGCATATTAGAA
TTTGAACTACCTGGGGATTCTTTTTCAGAACTATTCTTGTTGAACATTTATACTTAATTG
AAATAATTCCTTAAGGGCGGTTTTGTTTAAAGCATATTAACAGGAAGTTGTGTGTAAGAA
TATTTAATGAAATATGAAATTCAACAAGAATGATTAAGTCACTTCCCAAGTGGTTGTCAT
TTGTTAAACCCTGGTTACCTGTCTTGCTATCACGACCTTTCATTTTGAAGGATGTCTGTG
TTGTAGCTATAACTGTTCAAGTCTGGTGCTGACTGCTGTTCTTAGCCATCACAAAACGCT
AAATTTGTGTAATTGGAGCTTCCTGCTGTTATCTGGAAATGGTGGGAAAGCTCAGCTTTG
TATATTGTTTCCTAAAGTATATTAAAATAAAAAAAGAAACTATTGCTA
|
|
gi|62664091|ref|XP_574105.1| |
Protein identifier
|
gi|62664091|ref|XP_574105.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
89-275, gnl|bosTau2|chr13 (16685862-16686048) |
|
89-275, gnl|canFam2|chr2 (20401250-20401056) |
|
89-275, gnl|danRer3|chr15 (26610142-26610396) |
|
89-275, gnl|dasNov1|scaffold_3430 (84035-84229) |
|
89-275, gnl|echTel1|scaffold_255232 (1917-1732) |
|
89-275, gnl|fr1|chrUn (230544340-230544538) |
|
89-275, gnl|galGal2|chr2 (14673207-14673013) |
|
89-275, gnl|hg17|chr10 (28945107-28945304) |
|
89-275, gnl|Hg17|chr10 (28945109-28945298) |
|
89-275, gnl|loxAfr1|scaffold_2791 (9765-9571) |
|
89-275, gnl|mm7|chr18 (8125175-8125369) |
|
89-275, gnl|Mm7|chr18 (8125177-8125363) |
|
89-275, gnl|monDom2|scaffold_7 (39830144-39829950) |
|
89-275, gnl|panTro1|chr8 (29291725-29291922) |
|
89-275, gnl|rheMac2|chr9 (28709445-28709642) |
|
89-275, gnl|rn3|chr17 (64597182-64597373) |
|
89-275, gnl|tetNig1|chrUn_random (133024189-133023987) |
|
89-275, gnl|xenTro1|scaffold_42 (204252-204065) |
| |
|
401-1848, gnl|bosTau2|chr13 (16688594-16690039) |
|
401-1848, gnl|Hg17|chr10 (28948470-28949923) |
|
401-1848, gnl|Mm7|chr18 (8129822-8131269) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
89-275, gnl|bosTau2|chr13 (16685862-16686048) |
|
89-275, gnl|canFam2|chr2 (20401250-20401056) |
|
89-275, gnl|danRer3|chr15 (26610142-26610396) |
|
89-275, gnl|dasNov1|scaffold_3430 (84035-84229) |
|
89-275, gnl|echTel1|scaffold_255232 (1917-1732) |
|
89-275, gnl|fr1|chrUn (230544340-230544538) |
|
89-275, gnl|galGal2|chr2 (14673207-14673013) |
|
89-275, gnl|hg17|chr10 (28945107-28945304) |
|
89-275, gnl|Hg17|chr10 (28945109-28945298) |
|
89-275, gnl|loxAfr1|scaffold_2791 (9765-9571) |
|
89-275, gnl|mm7|chr18 (8125175-8125369) |
|
89-275, gnl|Mm7|chr18 (8125177-8125363) |
|
89-275, gnl|monDom2|scaffold_7 (39830144-39829950) |
|
89-275, gnl|panTro1|chr8 (29291725-29291922) |
|
89-275, gnl|rheMac2|chr9 (28709445-28709642) |
|
89-275, gnl|rn3|chr17 (64597182-64597373) |
|
89-275, gnl|tetNig1|chrUn_random (133024189-133023987) |
|
89-275, gnl|xenTro1|scaffold_42 (204252-204065) |
| |
|
401-1848, gnl|bosTau2|chr13 (16688594-16690039) |
|
401-1848, gnl|Hg17|chr10 (28948470-28949923) |
|
401-1848, gnl|Mm7|chr18 (8129822-8131269) |
|
cbe (0.717703) |
|
sin (0.69979) |
|
pro (0.512033) |
|
bla (0.497389) |
|
spc (0.453463) |
|
cty (0.41632) |
|
gul (0.355177) |
|
rec (0.346141) |
|
duo (0.345602) |
|
csk (0.281492) |
|
ste (0.270416) |
|
lyg (0.266205) |
|
nmm (0.265604) |
|
ova (0.258264) |
|
ret (0.257467) |
|
sug (0.254582) |
|
pan (0.23596) |
|
cbl (0.229595) |
|
tes (0.207814) |
|
hea (0.204499) |
|
nbm (0.198649) |
|
aor (0.195274) |
|
sag (0.182715) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
csp (0.161186) |
|
lun (0.150489) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
ski (0.146735) |
|
spl (0.143184) |
|
pla (0.133672) |
|
kid (0.129735) |
|
thg (0.126791) |
|
tra (0.123092) |
|
eru (0.120048) |
|
ldo (0.0970026) |
|
cbe (0.717703) |
|
sin (0.69979) |
|
pro (0.512033) |
|
bla (0.497389) |
|
spc (0.453463) |
|
cty (0.41632) |
|
gul (0.355177) |
|
rec (0.346141) |
|
duo (0.345602) |
|
csk (0.281492) |
|
ste (0.270416) |
|
lyg (0.266205) |
|
nmm (0.265604) |
|
ova (0.258264) |
|
ret (0.257467) |
|
sug (0.254582) |
|
pan (0.23596) |
|
cbl (0.229595) |
|
tes (0.207814) |
|
hea (0.204499) |
|
nbm (0.198649) |
|
aor (0.195274) |
|
sag (0.182715) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
csp (0.161186) |
|
lun (0.150489) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
ski (0.146735) |
|
spl (0.143184) |
|
pla (0.133672) |
|
kid (0.129735) |
|
thg (0.126791) |
|
tra (0.123092) |
|
eru (0.120048) |
|
ldo (0.0970026) |
