Non-Coding RNA Search

Ss1.1-rspc030_f7.5

Sequence:


               
               ATAAATAATTTTTTTGGTTTTGTTTTAAATGACAGTAAGCTACAAATCATGGTGTTAATC
TTAAATTTTCTGAAGATGAATTGTGTGGCAGTGATTGTGTGGTCTGTTTGTGGAGAACGT
ATGAAAGCTATTCCTGTTTGAAAATAGGTGAATAAATTGGCTATGTTGTTCCAATGAATG
TACAGCACGTCCATTAACTTTTGAAAGCAACACAGCCTTAAACTCAATGTCTTTGCTTTA
TGACACGGGAATGTTCTGTCATCAACAGAGTGTATGCTTAGAATTCTTTATATCATTCTC
AATTCTATAGCCTTTCAATCCTATGTAATGAGGATGAGGGATTTTTGCTTCTTCTTTTTT
TTAATTTTGTACATTCCATCTTTATAGGTCTGTTTCATACGTTTTGTGTAGAGAACACTA
AGTCTTGCTCTCTCTGACACTGACACGGATAGATTCTCACCATTTGTTCTTTTATGAATC
AAAATGCTGACTGCCTATTTAAAGAAAAGAATGAACGCTGTGCATCAAAGTGTTTGTATG
TTCGTAGCTACATACGTACCACAGTATTTTGGATGCTTTAGTCTACAATAAATCTTTAAA
TTAATTGTCTTGAAACATAGGAGAAACAAGATTTATGTGTATATCTTGACCATGCACAAA
ATCTCAAATCATTATAATAAAGCTTGTTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAATAATTTTTTTGGTTTTGTTTTAAATGACAGTAAGCTACAAATCATGGTGTTAATC
TTAAATTTTCTGAAGATGAATTGTGTGGCAGTGATTGTGTGGTCTGTTTGTGGAGAACGT
ATGAAAGCTATTCCTGTTTGAAAATAGGTGAATAAATTGGCTATGTTGTTCCAATGAATG
TACAGCACGTCCATTAACTTTTGAAAGCAACACAGCCTTAAACTCAATGTCTTTGCTTTA
TGACACGGGAATGTTCTGTCATCAACAGAGTGTATGCTTAGAATTCTTTATATCATTCTC
AATTCTATAGCCTTTCAATCCTATGTAATGAGGATGAGGGATTTTTGCTTCTTCTTTTTT
TTAATTTTGTACATTCCATCTTTATAGGTCTGTTTCATACGTTTTGTGTAGAGAACACTA
AGTCTTGCTCTCTCTGACACTGACACGGATAGATTCTCACCATTTGTTCTTTTATGAATC
AAAATGCTGACTGCCTATTTAAAGAAAAGAATGAACGCTGTGCATCAAAGTGTTTGTATG
TTCGTAGCTACATACGTACCACAGTATTTTGGATGCTTTAGTCTACAATAAATCTTTAAA
TTAATTGTCTTGAAACATAGGAGAAACAAGATTTATGTGTATATCTTGACCATGCACAAA
ATCTCAAATCATTATAATAAAGCTTGTTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               114-269, - strand, RNAz p=0.578417

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-269, - strand, RNAz p=0.578417

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               83-181, + strand, RNAmicro p=0.919851
               

               
               132-240, - strand, RNAmicro p=0.90078

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               83-181, + strand, RNAmicro p=0.919851
               

               
               132-240, - strand, RNAmicro p=0.90078

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-695, gnl|bosTau2|chr17 (3285138-3284450)
               

               
               1-695, gnl|Hg17|chr4 (154617374-154618074)
               

               
               1-695, gnl|Mm7|chr3 (84274356-84273650)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-695, gnl|bosTau2|chr17 (3285138-3284450)
               

               
               1-695, gnl|Hg17|chr4 (154617374-154618074)
               

               
               1-695, gnl|Mm7|chr3 (84274356-84273650)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fbs (0.526039)
               

               
               fcc (0.39557)
               

               
               ret (0.3862)
               

               
               fce (0.271592)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.526039)
               

               
               fcc (0.39557)
               

               
               ret (0.3862)
               

               
               fce (0.271592)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               spc (0.113366)

	83-181, + strand, RNAmicro p=0.919851
	132-240, - strand, RNAmicro p=0.90078

	1-695, gnl\|bosTau2\|chr17 (3285138-3284450)
	1-695, gnl\|Hg17\|chr4 (154617374-154618074)
	1-695, gnl\|Mm7\|chr3 (84274356-84273650)

	fbs (0.526039)
	fcc (0.39557)
	ret (0.3862)
	fce (0.271592)
	eye (0.170503)
	fco (0.157208)
	spc (0.113366)