Non-Coding RNA Search

Ss1.1-rspc030_g2.5

Sequence:


               
               CTAGGTAACGTTTTTGGAATGGACTTATTATGTCTTTTTGTTTTTTAGGTGAAAGTTAAA
TTTGTTGTAATGCTCATTCCCTAAAGCCAACAGAGGTTTGTAGATTTAAAGGGGTCACAT
TTAGAGAATGCAGTGGTGTTTAAAAAGGAAAGCCAGCCCTGAGTCGTCAGGTCAGTTGAA
TGTGCTTGTCTGGGGTCCCGACCTCTCAAGGGAAAGGAGCCTGGTGGGCCCCACAGACCC
TGCAGATCTGTTGGCTCTAATCCTCAATTACATAATCTTATGCTTTAATACATAACTGCA
TTGGATGTGACAGAAACGTACCTGTATAGTCACTGTTCTATATATTAACCTTTAACACTG
CTGTGATTGCTCAAGAACACTTTATGTTATGGCTTTCAAGCAAAGGCATGATTATTAGAA
ACTATTTAAGCTTTTTTTCTTTGAAAAACAAGCTCCTTTTACAGAATATAAGCAACAGTA
GTGCCTGTGGTTTAGCCCACCAATCTTGATGACTAAAAGTAGCTGATGCATTGTGCATAT
GATGCTTGAGATGGTTTTTGCAAAAGCAGAAATCACTGCAAGGTAATTACAATAGATAAA
AGTGGTATTTTAAACCTTTGAAATAAATGGATGTAACTGTACCGCGGTACAGCTTTTCAC
TTGTTTAGTTTTTAAACGTTAGTATAATCTGAATAAATTTAATATAAAATGTTGCCAAAT
TCAATGTAGAAAGAATGTGACAAAACACTTTGGGTAGTTCTGTTTGTGTTTTTGCATATT
GTAAAAGCAGTGTCACAGCTAAAAATAAAGAAATCGTTTCTAAAGGTAAATTATTGTGCT
TTAGTTGCTAGTTTGTACCGAGAGTTGACCTCTCCCTGTGCAGTTTTTTGTTCTAAACTT
GTATAAATAACAATTGTGTAATGTGTCTCCCTTCTACCTTGTAATAGTTGCTTCAGCCTA
CATTATAAATAAAGAACCACTAGAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAGGTAACGTTTTTGGAATGGACTTATTATGTCTTTTTGTTTTTTAGGTGAAAGTTAAA
TTTGTTGTAATGCTCATTCCCTAAAGCCAACAGAGGTTTGTAGATTTAAAGGGGTCACAT
TTAGAGAATGCAGTGGTGTTTAAAAAGGAAAGCCAGCCCTGAGTCGTCAGGTCAGTTGAA
TGTGCTTGTCTGGGGTCCCGACCTCTCAAGGGAAAGGAGCCTGGTGGGCCCCACAGACCC
TGCAGATCTGTTGGCTCTAATCCTCAATTACATAATCTTATGCTTTAATACATAACTGCA
TTGGATGTGACAGAAACGTACCTGTATAGTCACTGTTCTATATATTAACCTTTAACACTG
CTGTGATTGCTCAAGAACACTTTATGTTATGGCTTTCAAGCAAAGGCATGATTATTAGAA
ACTATTTAAGCTTTTTTTCTTTGAAAAACAAGCTCCTTTTACAGAATATAAGCAACAGTA
GTGCCTGTGGTTTAGCCCACCAATCTTGATGACTAAAAGTAGCTGATGCATTGTGCATAT
GATGCTTGAGATGGTTTTTGCAAAAGCAGAAATCACTGCAAGGTAATTACAATAGATAAA
AGTGGTATTTTAAACCTTTGAAATAAATGGATGTAACTGTACCGCGGTACAGCTTTTCAC
TTGTTTAGTTTTTAAACGTTAGTATAATCTGAATAAATTTAATATAAAATGTTGCCAAAT
TCAATGTAGAAAGAATGTGACAAAACACTTTGGGTAGTTCTGTTTGTGTTTTTGCATATT
GTAAAAGCAGTGTCACAGCTAAAAATAAAGAAATCGTTTCTAAAGGTAAATTATTGTGCT
TTAGTTGCTAGTTTGTACCGAGAGTTGACCTCTCCCTGTGCAGTTTTTTGTTCTAAACTT
GTATAAATAACAATTGTGTAATGTGTCTCCCTTCTACCTTGTAATAGTTGCTTCAGCCTA
CATTATAAATAAAGAACCACTAGAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               269-435, gnl|bosTau2|chr14 (13215228-13215395)
               

               
               269-435, gnl|Hg17|chr8 (125632920-125632755)
               

               
               269-435, gnl|Mm7|chr15 (59008810-59008641)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               269-435, gnl|bosTau2|chr14 (13215228-13215395)
               

               
               269-435, gnl|Hg17|chr8 (125632920-125632755)
               

               
               269-435, gnl|Mm7|chr15 (59008810-59008641)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               kid (0.518941)
               

               
               mgp (0.461361)
               

               
               lin (0.436808)
               

               
               rec (0.346141)
               

               
               ret (0.257467)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.518941)
               

               
               mgp (0.461361)
               

               
               lin (0.436808)
               

               
               rec (0.346141)
               

               
               ret (0.257467)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	269-435, gnl\|bosTau2\|chr14 (13215228-13215395)
	269-435, gnl\|Hg17\|chr8 (125632920-125632755)
	269-435, gnl\|Mm7\|chr15 (59008810-59008641)

	kid (0.518941)
	mgp (0.461361)
	lin (0.436808)
	rec (0.346141)
	ret (0.257467)
	ecc (0.23007)
	fcc (0.197785)
	sto (0.179824)
	fhi (0.169578)
	nco (0.161734)
	liv (0.146284)
	hyp (0.142837)
	pla (0.133672)
	bla (0.124347)
	clu (0.119646)
	spc (0.113366)
	nbm (0.0993246)