Ss1.1-rspc030_h12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGTGTGGAGTGAGTGGCGCTGCGGGTGGGGCCGTCGGCGGCGCTGGTGAGGGAACGCC GAGCGGTCGCCGCAGCCTCTGCCGCCGAGAAGCCCTTGTTCCCGCGGCCGGGAAGGAGCG TCTAGTGCCGACAAGATGGCGGACGGGGAGCTGAACGTGGACAGTCTCATCACCCGACTG CTGGAGGTACGAGGATGTCGTCCAGGAAAGATTGTGCAGATGACTGAAGCAGAGGTTCGG GGTTTATGTATCAAGTCTCGGGAGATCTTTCTCAGCCAGCCTATTCTTTTGGAATTGGAA GCACCACTGAAGATTTGTGGAGATATTCATGGACAGTATACAGATTTACTGCGATTATTT GAATATGGAGGTTTCCCACCAGAGGCCAACTATCTTTTCTTAGGAGATTATGTAGACAGA GGAAAGCAGTCTTTGGAAACCATTTGTTTGCTGCTGGCTTATAAAATCAAATATCCAGAG AACTTCTTTCTCTTAAGAGGAAACCATGAGTGTGCTAGCATCAATCGCATTTATGGATTC TATGATGAATGCAAACGAAGGTTTAATATTAAATTGTGGAAGACCTTCACTGATTGTTTC AACTGCTTGCCTATAGCTGCCATTGTGGATGAGAAGATCTTCTGTTGTCACGGAGGACTG TCACCAGACCTGCAGTCTATGGAGCAGATTCGGAGAATCATGAGACCCACTGATGTCCCT GATACAGGTTTGCTCTGTGATTTGCTGTGGTCTGACCCAGATAAGGATGTGCAAGGTTGG GGAGAAAATGACCGTGGTGTTTCCTTCACTTTTGGAGCTGATGTAGTCAGTAAATTTCTG AATCGTCATGATTTAGACTTAATTTGTCGAGCTCATCAGGTGGTGGAAGATGGATATGAA TTCTTTGCTAAACGACAATTGGTAACCCTATTTTCAGCCCCAAATTACTGTGGCGAGTTT GATAATGCTGGTGGAATGATGAGTGTGGATGAAACTTTGATGTGTTCATTTCAGATATTG AAACCATCTGAAAAGAAAGCTAAGTACCAATATGGTGGACTGAATTCAGGACGTCCTGTC ACTCCACCTCGAACAGCTAATCCTCCGAAGAAAAGGTGAAGAAAGGAACTCTGTAAAGAA ACCATCAGATTTGTTAAGGACATACTTCATGATATATAAGTGTGCACTGTAAAACCATCC AGCCATTTGACACCCTTTATGATGTCACACCTTTAACTTAAGGAGACGGGTAAAGGATCT TAAATTTTTTTCTAATAGAAAGATGTGCTACACTGTATTGTAATAAGTATACTCTGTTAA AATATTCAACAAAGTTAAATCTAAATTCAGACTTACCCATTAAAGTTACATCTTCACGTA TCAGTTTTTAAAGTTGAAAAGCATCCCAGTTAAACTAGATGTGATAGTTAAACCAGATGA AAGCATGATGATCCATCTGTGTAATGTGGTTTTAGTGTTGCTTGGTTGTTTAATTATTTT GGGCTTGTTTTGTTTTGTTTGTTTTTGCTAGAATAATGGCAGATTCTTTAAATTTTTTTC CCAAACATCCTTAGAGTGAAATGTGGGAAGAATTTTAAAGACGTTGATTGGCTATTATTT TCCCTTGCTTATTTACTTATGTACCTGTTTGATCTTACTGAGAAAACTTAATGCCTCATA ACAGTAAAAAGGAATTTTAGAGATATTTTTTAAAAATATGCAAACTGTTCGACCGAGTGA TTTAATCAGTTTGGGCAAATGTTACAGCTGATAATGAATATTTTGCTTTATACAGAAATT GCCACTGATTTGGATTTGTGCACTCTAATTTTAACTTATTGATGCTCTATTGTGCAGTAG CATTTCATTTAACTTTAAGATAAGGCTCATTTAGTATACCCAACTAGTTGGTAATGTGAT TATGTGGTACCTTGGCTTTAGGTTTTAATTCGCACGGAACACCTTTTTGGCATGCTTAAC TTTCTGGTAACACCCTCACCTGCATCGGTTTCGGTTTTTTTTGTTTGTTTGTTTTGTTTT GTTTGGGGGGGTTTTTTGTTTGTTTGTGTGCGTGTGTGTTGTTGTTTTTTGTTTTTAGAT CCACAAAACATGAGAATCCTTTTTTGACGAGCCTTGGAAAGCTGACACTATCTCTTTTTT CCTCCCTCTGTACGAAGGATGTATTTAAATGAATGCTGGTCAGTGGGACGTTTGTCAACT CTGGGTATTGGGTGCTTTTAACTGTCTAATATTGCCATGTGAATGTTGTATACGATTGTA AGGCTTATGTCACTAAAGATTTTTATTCTGATTTTTCATGATCAAAGTTCATATGATATT GTATAGACATGCTTTGTAGTGAACTATAGTAGCAATAATTTCTGTACATGATCAAGGGTT TATTGCAGCATTTCTTGTTCTCTTTTGTTTTAAGGGTTAGTATTAACAAATGACAGGAAT AGAAAAATCAGCATAAAGATTTTAGAAGGAGAACTTAAAGGACACAGATTTGTGATTCTT TGGATGCAACACTTTTGGATGTGATTCTAAAAGCTTTTATTGAGCATTGTCAAATTTGTA TGCTTCACAGGGACAGACATCATATTTATAATACCCTTCTATAAGTGCTACCATAGATGT GAAATTCTTGACCTTAATATTGTCTTTGAAAATGTTAAATTGAGAATTCTGTTAACTTAC ATTTTAAGAATTGGCATATTGTATTGCTGCAAGAGATATCATTTTCAGCACAGTGCAAAG TTCTTTTAAATGCATATGTCTTTTTTTTCTAATTCCATTTTGTTTTAAAGCACATTTTAA ATGTAGTTTTCTCATTTAGTAAAAGTTGTCTAATTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGTGTGGAGTGAGTGGCGCTGCGGGTGGGGCCGTCGGCGGCGCTGGTGAGGGAACGCC GAGCGGTCGCCGCAGCCTCTGCCGCCGAGAAGCCCTTGTTCCCGCGGCCGGGAAGGAGCG TCTAGTGCCGACAAGATGGCGGACGGGGAGCTGAACGTGGACAGTCTCATCACCCGACTG CTGGAGGTACGAGGATGTCGTCCAGGAAAGATTGTGCAGATGACTGAAGCAGAGGTTCGG GGTTTATGTATCAAGTCTCGGGAGATCTTTCTCAGCCAGCCTATTCTTTTGGAATTGGAA GCACCACTGAAGATTTGTGGAGATATTCATGGACAGTATACAGATTTACTGCGATTATTT GAATATGGAGGTTTCCCACCAGAGGCCAACTATCTTTTCTTAGGAGATTATGTAGACAGA GGAAAGCAGTCTTTGGAAACCATTTGTTTGCTGCTGGCTTATAAAATCAAATATCCAGAG AACTTCTTTCTCTTAAGAGGAAACCATGAGTGTGCTAGCATCAATCGCATTTATGGATTC TATGATGAATGCAAACGAAGGTTTAATATTAAATTGTGGAAGACCTTCACTGATTGTTTC AACTGCTTGCCTATAGCTGCCATTGTGGATGAGAAGATCTTCTGTTGTCACGGAGGACTG TCACCAGACCTGCAGTCTATGGAGCAGATTCGGAGAATCATGAGACCCACTGATGTCCCT GATACAGGTTTGCTCTGTGATTTGCTGTGGTCTGACCCAGATAAGGATGTGCAAGGTTGG GGAGAAAATGACCGTGGTGTTTCCTTCACTTTTGGAGCTGATGTAGTCAGTAAATTTCTG AATCGTCATGATTTAGACTTAATTTGTCGAGCTCATCAGGTGGTGGAAGATGGATATGAA TTCTTTGCTAAACGACAATTGGTAACCCTATTTTCAGCCCCAAATTACTGTGGCGAGTTT GATAATGCTGGTGGAATGATGAGTGTGGATGAAACTTTGATGTGTTCATTTCAGATATTG AAACCATCTGAAAAGAAAGCTAAGTACCAATATGGTGGACTGAATTCAGGACGTCCTGTC ACTCCACCTCGAACAGCTAATCCTCCGAAGAAAAGGTGAAGAAAGGAACTCTGTAAAGAA ACCATCAGATTTGTTAAGGACATACTTCATGATATATAAGTGTGCACTGTAAAACCATCC AGCCATTTGACACCCTTTATGATGTCACACCTTTAACTTAAGGAGACGGGTAAAGGATCT TAAATTTTTTTCTAATAGAAAGATGTGCTACACTGTATTGTAATAAGTATACTCTGTTAA AATATTCAACAAAGTTAAATCTAAATTCAGACTTACCCATTAAAGTTACATCTTCACGTA TCAGTTTTTAAAGTTGAAAAGCATCCCAGTTAAACTAGATGTGATAGTTAAACCAGATGA AAGCATGATGATCCATCTGTGTAATGTGGTTTTAGTGTTGCTTGGTTGTTTAATTATTTT GGGCTTGTTTTGTTTTGTTTGTTTTTGCTAGAATAATGGCAGATTCTTTAAATTTTTTTC CCAAACATCCTTAGAGTGAAATGTGGGAAGAATTTTAAAGACGTTGATTGGCTATTATTT TCCCTTGCTTATTTACTTATGTACCTGTTTGATCTTACTGAGAAAACTTAATGCCTCATA ACAGTAAAAAGGAATTTTAGAGATATTTTTTAAAAATATGCAAACTGTTCGACCGAGTGA TTTAATCAGTTTGGGCAAATGTTACAGCTGATAATGAATATTTTGCTTTATACAGAAATT GCCACTGATTTGGATTTGTGCACTCTAATTTTAACTTATTGATGCTCTATTGTGCAGTAG CATTTCATTTAACTTTAAGATAAGGCTCATTTAGTATACCCAACTAGTTGGTAATGTGAT TATGTGGTACCTTGGCTTTAGGTTTTAATTCGCACGGAACACCTTTTTGGCATGCTTAAC TTTCTGGTAACACCCTCACCTGCATCGGTTTCGGTTTTTTTTGTTTGTTTGTTTTGTTTT GTTTGGGGGGGTTTTTTGTTTGTTTGTGTGCGTGTGTGTTGTTGTTTTTTGTTTTTAGAT CCACAAAACATGAGAATCCTTTTTTGACGAGCCTTGGAAAGCTGACACTATCTCTTTTTT CCTCCCTCTGTACGAAGGATGTATTTAAATGAATGCTGGTCAGTGGGACGTTTGTCAACT CTGGGTATTGGGTGCTTTTAACTGTCTAATATTGCCATGTGAATGTTGTATACGATTGTA AGGCTTATGTCACTAAAGATTTTTATTCTGATTTTTCATGATCAAAGTTCATATGATATT GTATAGACATGCTTTGTAGTGAACTATAGTAGCAATAATTTCTGTACATGATCAAGGGTT TATTGCAGCATTTCTTGTTCTCTTTTGTTTTAAGGGTTAGTATTAACAAATGACAGGAAT AGAAAAATCAGCATAAAGATTTTAGAAGGAGAACTTAAAGGACACAGATTTGTGATTCTT TGGATGCAACACTTTTGGATGTGATTCTAAAAGCTTTTATTGAGCATTGTCAAATTTGTA TGCTTCACAGGGACAGACATCATATTTATAATACCCTTCTATAAGTGCTACCATAGATGT GAAATTCTTGACCTTAATATTGTCTTTGAAAATGTTAAATTGAGAATTCTGTTAACTTAC ATTTTAAGAATTGGCATATTGTATTGCTGCAAGAGATATCATTTTCAGCACAGTGCAAAG TTCTTTTAAATGCATATGTCTTTTTTTTCTAATTCCATTTTGTTTTAAAGCACATTTTAA ATGTAGTTTTCTCATTTAGTAAAAGTTGTCTAATTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 353-1635, + strand, RNAz p=0.967977 | |
| 662-781, + strand, RNAz p=0.66056 | |
| 1246-1365, no strand, RNAz p=0.572536 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 353-1635, + strand, RNAz p=0.967977 | |
| 662-781, + strand, RNAz p=0.66056 | |
| 1246-1365, no strand, RNAz p=0.572536 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 314-554, gnl|bosTau2|chr11 (51184930-51185170) | |
| 314-554, gnl|Hg17|chr2 (28913320-28913560) | |
| 314-554, gnl|Mm7|chr5 (31513200-31513440) | |
| 603-883, gnl|bosTau2|chr29 (39767856-39768138) | |
| 603-883, gnl|Hg17|chr11 (66923280-66922983) | |
| 603-883, gnl|Mm7|chr19 (4089216-4089500) | |
| 723-881, gnl|bosTau2|chr11 (51192942-51193100) | |
| 723-881, gnl|canFam2|chr17 (25796510-25796708) | |
| 723-881, gnl|danRer3|chr17 (1295199-1295374) | |
| 723-881, gnl|dasNov1|scaffold_63002 (5913-5712) | |
| 723-881, gnl|echTel1|scaffold_268310 (17986-18187) | |
| 723-881, gnl|fr1|chrUn (192601130-192600956) | |
| 723-881, gnl|galGal2|chr3 (23541530-23541344) | |
| 723-881, gnl|hg17|chr2 (28923155-28923356) | |
| 723-881, gnl|Hg17|chr2 (28923170-28923328) | |
| 723-881, gnl|loxAfr1|scaffold_2968 (39054-39255) | |
| 723-881, gnl|mm7|chr5 (31518377-31518574) | |
| 723-881, gnl|Mm7|chr5 (31518392-31518550) | |
| 723-881, gnl|monDom2|scaffold_1 (146800242-146800057) | |
| 723-881, gnl|oryCun1|scaffold_213132 (121670-121857) | |
| 723-881, gnl|panTro1|chr12 (29881439-29881640) | |
| 723-881, gnl|rheMac2|chr13 (28783265-28783466) | |
| 723-881, gnl|rn3|chr6 (24077847-24077663) | |
| 723-881, gnl|tetNig1|chr10 (8138381-8138548) | |
| 723-881, gnl|xenTro1|scaffold_178 (1350183-1350360) | |
| 1009-2040, gnl|bosTau2|chr11 (51197954-51198993) | |
| 1009-2040, gnl|Hg17|chr2 (28933710-28934776) | |
| 1009-2040, gnl|Mm7|chr5 (31523464-31524503) | |
| 2054-2856, gnl|bosTau2|chr11 (51198960-51199755) | |
| 2054-2856, gnl|Hg17|chr2 (28934722-28935553) | |
| 2054-2856, gnl|Mm7|chr5 (31524475-31525266) | |
| 2288-2836, gnl|bosTau2|chr10 (52602917-52602378) | |
| 2288-2836, gnl|Hg17|chr14 (64731510-64730967) | |
| 2288-2836, gnl|Mm7|chr12 (74989333-74988663) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 314-554, gnl|bosTau2|chr11 (51184930-51185170) | |
| 314-554, gnl|Hg17|chr2 (28913320-28913560) | |
| 314-554, gnl|Mm7|chr5 (31513200-31513440) | |
| 603-883, gnl|bosTau2|chr29 (39767856-39768138) | |
| 603-883, gnl|Hg17|chr11 (66923280-66922983) | |
| 603-883, gnl|Mm7|chr19 (4089216-4089500) | |
| 723-881, gnl|bosTau2|chr11 (51192942-51193100) | |
| 723-881, gnl|canFam2|chr17 (25796510-25796708) | |
| 723-881, gnl|danRer3|chr17 (1295199-1295374) | |
| 723-881, gnl|dasNov1|scaffold_63002 (5913-5712) | |
| 723-881, gnl|echTel1|scaffold_268310 (17986-18187) | |
| 723-881, gnl|fr1|chrUn (192601130-192600956) | |
| 723-881, gnl|galGal2|chr3 (23541530-23541344) | |
| 723-881, gnl|hg17|chr2 (28923155-28923356) | |
| 723-881, gnl|Hg17|chr2 (28923170-28923328) | |
| 723-881, gnl|loxAfr1|scaffold_2968 (39054-39255) | |
| 723-881, gnl|mm7|chr5 (31518377-31518574) | |
| 723-881, gnl|Mm7|chr5 (31518392-31518550) | |
| 723-881, gnl|monDom2|scaffold_1 (146800242-146800057) | |
| 723-881, gnl|oryCun1|scaffold_213132 (121670-121857) | |
| 723-881, gnl|panTro1|chr12 (29881439-29881640) | |
| 723-881, gnl|rheMac2|chr13 (28783265-28783466) | |
| 723-881, gnl|rn3|chr6 (24077847-24077663) | |
| 723-881, gnl|tetNig1|chr10 (8138381-8138548) | |
| 723-881, gnl|xenTro1|scaffold_178 (1350183-1350360) | |
| 1009-2040, gnl|bosTau2|chr11 (51197954-51198993) | |
| 1009-2040, gnl|Hg17|chr2 (28933710-28934776) | |
| 1009-2040, gnl|Mm7|chr5 (31523464-31524503) | |
| 2054-2856, gnl|bosTau2|chr11 (51198960-51199755) | |
| 2054-2856, gnl|Hg17|chr2 (28934722-28935553) | |
| 2054-2856, gnl|Mm7|chr5 (31524475-31525266) | |
| 2288-2836, gnl|bosTau2|chr10 (52602917-52602378) | |
| 2288-2836, gnl|Hg17|chr14 (64731510-64730967) | |
| 2288-2836, gnl|Mm7|chr12 (74989333-74988663) |
| Expressed library(ies): 56 entry(ies) | More info |
| Expressed library(ies): 56 entry(ies) | Help | Less info |
| bfe (3.74644) | |
| vin (3.65813) | |
| fco (3.14416) | |
| tra (2.46184) | |
| tbr (2.31267) | |
| ret (2.05973) | |
| ste (1.89292) | |
| mgm (1.62308) | |
| liv (1.46284) | |
| mgp (1.38408) | |
| lin (1.31043) | |
| mga (1.12144) | |
| isp (1.05263) | |
| rec (1.03842) | |
| kid (0.908147) | |
| ldo (0.679018) | |
| lyg (0.665513) | |
| sme (0.610874) | |
| sag (0.548145) | |
| eye (0.511509) | |
| sug (0.509165) | |
| cbe (0.478469) | |
| tes (0.415628) | |
| hea (0.408998) | |
| nlu (0.383362) | |
| gul (0.355177) | |
| ton (0.351) | |
| fbs (0.350693) | |
| sin (0.349895) | |
| ecc (0.345105) | |
| cbl (0.344392) | |
| mcp (0.341297) | |
| nje (0.33184) | |
| fat (0.294855) | |
| hyp (0.285673) | |
| thg (0.253582) | |
| bla (0.248694) | |
| eru (0.240096) | |
| spc (0.226732) | |
| mas (0.210305) | |
| nbm (0.198649) | |
| aor (0.195274) | |
| fty (0.17584) | |
| ctl (0.153069) | |
| lun (0.150489) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ute (0.132784) | |
| ova (0.129132) | |
| ese (0.126502) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 56 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bfe (3.74644) | |
| vin (3.65813) | |
| fco (3.14416) | |
| tra (2.46184) | |
| tbr (2.31267) | |
| ret (2.05973) | |
| ste (1.89292) | |
| mgm (1.62308) | |
| liv (1.46284) | |
| mgp (1.38408) | |
| lin (1.31043) | |
| mga (1.12144) | |
| isp (1.05263) | |
| rec (1.03842) | |
| kid (0.908147) | |
| ldo (0.679018) | |
| lyg (0.665513) | |
| sme (0.610874) | |
| sag (0.548145) | |
| eye (0.511509) | |
| sug (0.509165) | |
| cbe (0.478469) | |
| tes (0.415628) | |
| hea (0.408998) | |
| nlu (0.383362) | |
| gul (0.355177) | |
| ton (0.351) | |
| fbs (0.350693) | |
| sin (0.349895) | |
| ecc (0.345105) | |
| cbl (0.344392) | |
| mcp (0.341297) | |
| nje (0.33184) | |
| fat (0.294855) | |
| hyp (0.285673) | |
| thg (0.253582) | |
| bla (0.248694) | |
| eru (0.240096) | |
| spc (0.226732) | |
| mas (0.210305) | |
| nbm (0.198649) | |
| aor (0.195274) | |
| fty (0.17584) | |
| ctl (0.153069) | |
| lun (0.150489) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ute (0.132784) | |
| ova (0.129132) | |
| ese (0.126502) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) |