Non-Coding RNA Search

Ss1.1-rspc030_h22.5

Sequence:


               
               GAAAACCATGAGTCAATGTCAGGTTTTTAAAAAAATTCCATTTAGAGACAGCCGTTTGGG
AACCAAAGTATTTTACTGCACTCCGTTAAAAGAATTGAATTCAGTGCGCTGTAGTCATTT
ATTCGTACTGTCCAAATTTTCCACAAAGGTATACTTGGTTAATACTAATTTTCAAAAGGT
GATTATTTCTTCTTGACGTTCGTCCAAGACTGTTTCAGAATTTTCATTGAATACATACTT
AACTGCTTTAAAAAAATGTGGTTTTATAAGTGTGCATATTTTGTTGTCATATGCCTTAGC
AGAGAAATGGTTGTTCAGTTTCATTTAGGAAATAAGCTCTTTTGGACTGAAAATTCTTAG
TAAATAGGACTTCTACCTAATGTTAATCCATTGCTTATTTGTATCCAGTTGTCTGTTTAC
TTTGCTTAAATCCTGACTAAGATTGATCGGAGTCAATAAATTTGTACTGTATTTTGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAACCATGAGTCAATGTCAGGTTTTTAAAAAAATTCCATTTAGAGACAGCCGTTTGGG
AACCAAAGTATTTTACTGCACTCCGTTAAAAGAATTGAATTCAGTGCGCTGTAGTCATTT
ATTCGTACTGTCCAAATTTTCCACAAAGGTATACTTGGTTAATACTAATTTTCAAAAGGT
GATTATTTCTTCTTGACGTTCGTCCAAGACTGTTTCAGAATTTTCATTGAATACATACTT
AACTGCTTTAAAAAAATGTGGTTTTATAAGTGTGCATATTTTGTTGTCATATGCCTTAGC
AGAGAAATGGTTGTTCAGTTTCATTTAGGAAATAAGCTCTTTTGGACTGAAAATTCTTAG
TAAATAGGACTTCTACCTAATGTTAATCCATTGCTTATTTGTATCCAGTTGTCTGTTTAC
TTTGCTTAAATCCTGACTAAGATTGATCGGAGTCAATAAATTTGTACTGTATTTTGTTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-480, gnl|bosTau2|chr1 (92390641-92390170)
               

               
               3-480, gnl|Hg17|chr21 (42280471-42280011)
               

               
               3-480, gnl|Mm7|chr16 (98329377-98328904)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-480, gnl|bosTau2|chr1 (92390641-92390170)
               

               
               3-480, gnl|Hg17|chr21 (42280471-42280011)
               

               
               3-480, gnl|Mm7|chr16 (98329377-98328904)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	3-480, gnl\|bosTau2\|chr1 (92390641-92390170)
	3-480, gnl\|Hg17\|chr21 (42280471-42280011)
	3-480, gnl\|Mm7\|chr16 (98329377-98328904)