Non-Coding RNA Search

Ss1.1-rspc030_m14.5

Sequence:


               
               TAAATAATTGCTTAAACATGAGATTCCTACACTTTGTTTCTGTTGTTTGATGTTTTTCAT
AAATTCTTCTACTTTTCTGTCTTCCGATCCTTTACCTAATGCAGTTGGCCGGTGTTGGCT
TAAACTGTGGCTCAGTCTTGAAGATTTTAGAAATATTTTGATAACATGTATGATGGAATG
AAGCTATATCGTTATTGGAGATATGATTCCAAATAGAACAGAGTATTCTTCTTAGGCCAT
GAAACCAGGCAACTGACTTAGTGGTTTAAACTCAATAACGAACCAAAAAAATTCCAAAAT
AGAAGAGCAAATTCAAATGCTAGAATCGATCCCAGCAAAGCTGTTTGTTGCAGCCTGTTG
ACACTGTTCCCACATGGTGTGAACATTTGATACAGAAATTGCCTTTGTGACAGCTGAGAA
TGACAGTGCGAGCCTAATAGACAAACTTACCAAGCAGCAGAGAGCCAATATAAATTCTCA
TCATAAACACTATAGAATATGCAAATCCAGAATAATTTATGCCTGAAAGTAATTCTGTCT
TTCATAATACGTTTATGGCATCAAAGTTATTAGGAAGATGTATTTACTACCTGGAAAGTA
TAATGTAATAAAACTCACTCTCTTAACCACAGATTGTGTGCATTTGCGTTGGTTTTTATT
TTACAGATCCCCCAAAACAGCAGTAGCTTTTGAAACCCATAATTCTCTAAAATACATAGA
AGACATTTAATTCAGGGCTGAAAAACTGTGGCCACTCATTTTGGCAAATGACAATAGCCT
ATGAAAATACATATCAAATAAACATCTACATGTACAATAAATATTCAACTTAAGAACATT
TATAGTGTTACCCATGCATATTAAAATCCAAAAGCTAAAAAATACGCTGACTTTATATTA
CCCATCAGAATGTATTTCAAGATTCTCTTTGGGATTAATTAAATAAACATGCATTTTTTG
AAACTATATAAACAATTGTTTATCATTTTTATGACTCAAATCACAATAAAATTGTAATTC
ATGATAAACTGGTGAGAATAAACTGAACATATGGTTATATTCAAAATTATTTATTAACTG
AAATGTTATTCCAATGTTTGAGCTAATGTTAAAGGCGATTGAAACTGTAACGTCTAATAT
TTAGAATAATCTATTAAAGTAGCAGCATTGTGGTCGATTTCCATGAATTATGTTGTATCT
CATATTACTAAGCTTGTGCAAATAAACTGTTCAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAATAATTGCTTAAACATGAGATTCCTACACTTTGTTTCTGTTGTTTGATGTTTTTCAT
AAATTCTTCTACTTTTCTGTCTTCCGATCCTTTACCTAATGCAGTTGGCCGGTGTTGGCT
TAAACTGTGGCTCAGTCTTGAAGATTTTAGAAATATTTTGATAACATGTATGATGGAATG
AAGCTATATCGTTATTGGAGATATGATTCCAAATAGAACAGAGTATTCTTCTTAGGCCAT
GAAACCAGGCAACTGACTTAGTGGTTTAAACTCAATAACGAACCAAAAAAATTCCAAAAT
AGAAGAGCAAATTCAAATGCTAGAATCGATCCCAGCAAAGCTGTTTGTTGCAGCCTGTTG
ACACTGTTCCCACATGGTGTGAACATTTGATACAGAAATTGCCTTTGTGACAGCTGAGAA
TGACAGTGCGAGCCTAATAGACAAACTTACCAAGCAGCAGAGAGCCAATATAAATTCTCA
TCATAAACACTATAGAATATGCAAATCCAGAATAATTTATGCCTGAAAGTAATTCTGTCT
TTCATAATACGTTTATGGCATCAAAGTTATTAGGAAGATGTATTTACTACCTGGAAAGTA
TAATGTAATAAAACTCACTCTCTTAACCACAGATTGTGTGCATTTGCGTTGGTTTTTATT
TTACAGATCCCCCAAAACAGCAGTAGCTTTTGAAACCCATAATTCTCTAAAATACATAGA
AGACATTTAATTCAGGGCTGAAAAACTGTGGCCACTCATTTTGGCAAATGACAATAGCCT
ATGAAAATACATATCAAATAAACATCTACATGTACAATAAATATTCAACTTAAGAACATT
TATAGTGTTACCCATGCATATTAAAATCCAAAAGCTAAAAAATACGCTGACTTTATATTA
CCCATCAGAATGTATTTCAAGATTCTCTTTGGGATTAATTAAATAAACATGCATTTTTTG
AAACTATATAAACAATTGTTTATCATTTTTATGACTCAAATCACAATAAAATTGTAATTC
ATGATAAACTGGTGAGAATAAACTGAACATATGGTTATATTCAAAATTATTTATTAACTG
AAATGTTATTCCAATGTTTGAGCTAATGTTAAAGGCGATTGAAACTGTAACGTCTAATAT
TTAGAATAATCTATTAAAGTAGCAGCATTGTGGTCGATTTCCATGAATTATGTTGTATCT
CATATTACTAAGCTTGTGCAAATAAACTGTTCAATG

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-166, gnl|bosTau2|chr24 (21681598-21681438)
               

               
               1-166, gnl|Hg17|chr18 (22687253-22687075)
               


               
               170-1235, gnl|bosTau2|chr24 (21681220-21680158)
               

               
               170-1235, gnl|Hg17|chr18 (22687071-22686020)
               

               
               170-1235, gnl|Mm7|chr18 (15739580-15738620)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-166, gnl|bosTau2|chr24 (21681598-21681438)
               

               
               1-166, gnl|Hg17|chr18 (22687253-22687075)
               


               
               170-1235, gnl|bosTau2|chr24 (21681220-21680158)
               

               
               170-1235, gnl|Hg17|chr18 (22687071-22686020)
               

               
               170-1235, gnl|Mm7|chr18 (15739580-15738620)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               spc (2.38068)
               

               
               fco (1.8865)
               

               
               fhi (0.508733)
               

               
               hyp (0.285673)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               ebs (0.118301)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (2.38068)
               

               
               fco (1.8865)
               

               
               fhi (0.508733)
               

               
               hyp (0.285673)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               ebs (0.118301)

	1-166, gnl\|bosTau2\|chr24 (21681598-21681438)
	1-166, gnl\|Hg17\|chr18 (22687253-22687075)

	170-1235, gnl\|bosTau2\|chr24 (21681220-21680158)
	170-1235, gnl\|Hg17\|chr18 (22687071-22686020)
	170-1235, gnl\|Mm7\|chr18 (15739580-15738620)

	spc (2.38068)
	fco (1.8865)
	fhi (0.508733)
	hyp (0.285673)
	cbe (0.239234)
	fcc (0.197785)
	fbs (0.175346)
	ebs (0.118301)