Non-Coding RNA Search

Ss1.1-rspc030_n2.5

Sequence:


               
               AGGCTGCCCTCCCCCCAAAAAACAAATCGGTGCAGCTATAGGCCCCTTCTACCCAACACA
TAGCTCCCACCTGCAGAGTCTGGAACTCAGACTAACCATATATATGCCTGGGCGGTAGAG
GCTGAGCTTCATAAAAAAGGGCAGAATTTCAATTCAGGATGGGTTGAGATGGACTAAATA
AATTGACAGACCCTCCTTGAGTGCACTTTGCTTTCCAGAAATTCCCAAATTGACTTCATA
GAAGCTGGGGATTTCGTGGAATATAATGTGAAAAATGTTTTTTAACTCACTCCAAACTCT
GAGCTCCTTGAGGGGGTCAGTGACTTTTCACCTGTGTTTATCCCCTCCCAGCACAGTGCC
TGGCACGTATTAGGTGCTCAACAAACGTCTGCTGGGTAGAATCACTGATACCTGGGAACA
GGAGAAGGGAGTATCAGAGAAAGACTCAAAGATGAGTAAGAGGGAGTTCCTGTTGGGGTG
CATCGGGTCAAGAATCTGACTTCAGTGGCTCAGGTCACGGGTTCAGTCCCCATCCCGGTG
CAGTGGGTTAAAGGATCCAGCTCACGCTGCAGCTGCGGCTCAGCTTCAACCCCTGGCCCA
GGAACTTCCACATGCCACGGGCGCAGCCATGAAGAAGTAATAATAGTAATTTTTAAAAGA
TGAGTGAGAGGGAAGAGACGATGCCTGTGTCACGAGAGACAGGACTGGGAGAAATCACGA
GTGAGGGCTAGATGAGGGAGTGAGAATACCTCTAAGGGATAAGTCAAATGTGAGAAAAGA
AGCAGAGTGCGCTCTCCTACGAGAAAGGCTTCTTACTGTAAATAGTCCAAGGTGACAGTT
GTTATTTTTGAATACTGCTTTGGGGTGGTTTTTTTTCATTTTTGTATTTTAAAAATTTTA
TCAGAGAACAAAGATGTATGAAGTTTTCTTTTACTCTACACAATCCAAGTTAAATAGCTT
TTGGTGATGCACTGTACACTTTCTTAAGACTGTATCGAATAGCACCTTTTAACAGAATCA
AGCAATGACTGGCATTACTCATTGGGACCCGACCACTAAATAAAAATCTTTTATGCAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCTGCCCTCCCCCCAAAAAACAAATCGGTGCAGCTATAGGCCCCTTCTACCCAACACA
TAGCTCCCACCTGCAGAGTCTGGAACTCAGACTAACCATATATATGCCTGGGCGGTAGAG
GCTGAGCTTCATAAAAAAGGGCAGAATTTCAATTCAGGATGGGTTGAGATGGACTAAATA
AATTGACAGACCCTCCTTGAGTGCACTTTGCTTTCCAGAAATTCCCAAATTGACTTCATA
GAAGCTGGGGATTTCGTGGAATATAATGTGAAAAATGTTTTTTAACTCACTCCAAACTCT
GAGCTCCTTGAGGGGGTCAGTGACTTTTCACCTGTGTTTATCCCCTCCCAGCACAGTGCC
TGGCACGTATTAGGTGCTCAACAAACGTCTGCTGGGTAGAATCACTGATACCTGGGAACA
GGAGAAGGGAGTATCAGAGAAAGACTCAAAGATGAGTAAGAGGGAGTTCCTGTTGGGGTG
CATCGGGTCAAGAATCTGACTTCAGTGGCTCAGGTCACGGGTTCAGTCCCCATCCCGGTG
CAGTGGGTTAAAGGATCCAGCTCACGCTGCAGCTGCGGCTCAGCTTCAACCCCTGGCCCA
GGAACTTCCACATGCCACGGGCGCAGCCATGAAGAAGTAATAATAGTAATTTTTAAAAGA
TGAGTGAGAGGGAAGAGACGATGCCTGTGTCACGAGAGACAGGACTGGGAGAAATCACGA
GTGAGGGCTAGATGAGGGAGTGAGAATACCTCTAAGGGATAAGTCAAATGTGAGAAAAGA
AGCAGAGTGCGCTCTCCTACGAGAAAGGCTTCTTACTGTAAATAGTCCAAGGTGACAGTT
GTTATTTTTGAATACTGCTTTGGGGTGGTTTTTTTTCATTTTTGTATTTTAAAAATTTTA
TCAGAGAACAAAGATGTATGAAGTTTTCTTTTACTCTACACAATCCAAGTTAAATAGCTT
TTGGTGATGCACTGTACACTTTCTTAAGACTGTATCGAATAGCACCTTTTAACAGAATCA
AGCAATGACTGGCATTACTCATTGGGACCCGACCACTAAATAAAAATCTTTTATGCAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               328-441, - strand, RNAz p=0.759042

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               328-441, - strand, RNAz p=0.759042

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-465, gnl|bosTau2|chr6 (54402491-54402947)
               

               
               1-465, gnl|Hg17|chr4 (83762698-83761911)
               


               
               730-1080, gnl|bosTau2|chr6 (54402987-54403327)
               

               
               730-1080, gnl|Hg17|chr4 (83761869-83761508)
               

               
               730-1080, gnl|Mm7|chr5 (99293014-99292653)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-465, gnl|bosTau2|chr6 (54402491-54402947)
               

               
               1-465, gnl|Hg17|chr4 (83762698-83761911)
               


               
               730-1080, gnl|bosTau2|chr6 (54402987-54403327)
               

               
               730-1080, gnl|Hg17|chr4 (83761869-83761508)
               

               
               730-1080, gnl|Mm7|chr5 (99293014-99292653)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               fat (0.294855)
               

               
               mgp (0.230681)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               che (0.136314)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               mgp (0.230681)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               che (0.136314)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	1-465, gnl\|bosTau2\|chr6 (54402491-54402947)
	1-465, gnl\|Hg17\|chr4 (83762698-83761911)

	730-1080, gnl\|bosTau2\|chr6 (54402987-54403327)
	730-1080, gnl\|Hg17\|chr4 (83761869-83761508)
	730-1080, gnl\|Mm7\|chr5 (99293014-99292653)

	fat (0.294855)
	mgp (0.230681)
	ldo (0.194005)
	cmu (0.186393)
	fty (0.17584)
	fbs (0.175346)
	rec (0.17307)
	fco (0.157208)
	ski (0.146735)
	lin (0.145603)
	che (0.136314)
	thg (0.126791)
	spc (0.113366)