Non-Coding RNA Search

Ss1.1-rspc031_c13.5

Sequence:


               
               GGTGGGTGGGGTGGGATCCCTAACGTAATATTCTTTATGAAAGCATTAGCTGCTTTTGTT
ACATTTTTAATATGCAACCACTTCTTCACCTGAGGAAAACTAGAATGAAATGCAGTCTAA
GATATTTTGCACTGAATTGTAATTTCTTCATTAGTTTAGTCTGGAAACTGGTCTGTTTTA
ATGTTTTTAAAATGCTGTGTTATGTAGAGGCAAATCTGCAGACCACTGGAATACATTTGT
TAAATTCTCATCTGCAGGGACACTGGGTGATATTGGCAGTGACTGTTCTGCATTGAGGCT
TTGTTTGGTTTATTTATTAAAGTGTACAGTATTTAAAAAATCAAACATAGCTTTAGTTAA
AACACTAAGCTGAATTAGTCATGTCCATTCAGACATAACCTGAACTACTGACTGAAAAGA
TCAATTTCCAGAAGGTTTATTCTGTATAAACTACATGTTAGTCTTCAGTAGTTATCTTTT
CCTTTTCTTATTTTTCCTCCTTTTTTCTTTTTCTTTTTGTTATTTTTTTTTTTTTTGATT
TTGGTTGTTTGATGTGCAATATGTTTTTGTATGCAGGTAGTAAATAAACTTTGATCTTCC
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGGTGGGGTGGGATCCCTAACGTAATATTCTTTATGAAAGCATTAGCTGCTTTTGTT
ACATTTTTAATATGCAACCACTTCTTCACCTGAGGAAAACTAGAATGAAATGCAGTCTAA
GATATTTTGCACTGAATTGTAATTTCTTCATTAGTTTAGTCTGGAAACTGGTCTGTTTTA
ATGTTTTTAAAATGCTGTGTTATGTAGAGGCAAATCTGCAGACCACTGGAATACATTTGT
TAAATTCTCATCTGCAGGGACACTGGGTGATATTGGCAGTGACTGTTCTGCATTGAGGCT
TTGTTTGGTTTATTTATTAAAGTGTACAGTATTTAAAAAATCAAACATAGCTTTAGTTAA
AACACTAAGCTGAATTAGTCATGTCCATTCAGACATAACCTGAACTACTGACTGAAAAGA
TCAATTTCCAGAAGGTTTATTCTGTATAAACTACATGTTAGTCTTCAGTAGTTATCTTTT
CCTTTTCTTATTTTTCCTCCTTTTTTCTTTTTCTTTTTGTTATTTTTTTTTTTTTTGATT
TTGGTTGTTTGATGTGCAATATGTTTTTGTATGCAGGTAGTAAATAAACTTTGATCTTCC
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               265-501, + strand, RNAz p=0.968559

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               265-501, + strand, RNAz p=0.968559

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001013439, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001013439, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               226-601, gnl|bosTau2|chr1 (52719926-52720298)
               

               
               226-601, gnl|Hg17|chr3 (182177306-182177643)
               

               
               226-601, gnl|Mm7|chr3 (33878377-33878738)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               226-601, gnl|bosTau2|chr1 (52719926-52720298)
               

               
               226-601, gnl|Hg17|chr3 (182177306-182177643)
               

               
               226-601, gnl|Mm7|chr3 (33878377-33878738)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               vin (1.33023)
               

               
               isp (0.902256)
               

               
               fbs (0.350693)
               

               
               ste (0.270416)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (1.33023)
               

               
               isp (0.902256)
               

               
               fbs (0.350693)
               

               
               ste (0.270416)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	226-601, gnl\|bosTau2\|chr1 (52719926-52720298)
	226-601, gnl\|Hg17\|chr3 (182177306-182177643)
	226-601, gnl\|Mm7\|chr3 (33878377-33878738)

	vin (1.33023)
	isp (0.902256)
	fbs (0.350693)
	ste (0.270416)
	tes (0.207814)
	aor (0.195274)
	tbr (0.154178)
	bfe (0.149858)
	ski (0.146735)
	ssp (0.13552)
	ova (0.129132)
	spc (0.113366)
	ldo (0.0970026)