Non-Coding RNA Search

Ss1.1-rspc031_e15.5

Sequence:


               
               TCATATGAGAGAGCAGGTATCCTGCCCTTGAACACGCTGGTAAGTTGTATCATAATGTTT
TCAGAGTTTTGAGCATTTCCTGCTTTAAAAGACCTTCACGAGGGAACATGACACAGAGAA
GTTCTTCTGGCTTTCCTTTGGCACAGGGTGCATAGAGCAATAAAGATTTCTTTCCCCCCT
TCCTCCAGACACCTCTCGGCCTCTGTGCTGGCACTGCCACTTCTCTCTCCGAGGGCTGTG
AGCTGCCTTGAGTTTGATGAGATTACGATGCCCTCTGGAAGGGTTTGCCAGGTCAGACTG
ATCCTTGGTCAAGGATGGCGCGTGTACCCTCGGCAGCGTTGTGAAAAGTGATTCCATTGG
AAGCCTGTCGTTAACATATTTGCCACCAAGAACAAAATGTTGGCCAAAGGCTAACACGCG
ATTTCAAAAAGAAAATGCTGATCTGAGGACAAAAGGAAAAGTCTCCTTCCACTGTTCCAA
GTAGCGTCATCTTGCCATCATGTGGGAAGTTGTTCGATCGTGTGAAATCTCTCACTGTGC
ACTGTGAGTCGTGTATCCACAGAGCTGAGGAGTATCACGTGGGGAAACGTAAAAGTTAAA
AACAACAGCCAGGCCCGTGTGCTGTTAGTAGTGTGAAATTCTCATGTTTTTTTTAAAAAA
AAAAAAAACCAATAAGAACCAAATGTGACCTTGTCCTTTTGGCAGCTGAAATTCTTTAAG
GCTACCGATGGATGACCCCTTAAATCAGTCTCTCTTGATTTTCTGTGCCAGGAAGAGTTT
TCCTTGCACACCGTGTTTGGTTTTTTGTTTGGGGCGGGCGGGGGGTGGGGTTGGCTGCAA
AACTATTCCTTTTGACATTACAGGGACTTGTGAGAGCTCCTCTACACAGACATGAATAGC
CAAGCAAGAGCCACACGTACTGATTGTATCCACTCACCATCGACGATGGCATTGAACGTA
GCTAGCTTATTTCCATCACTACAGTTTTTTGAGCTTGCTGTTATGTTTTAAGAGGTGCCA
GGGGTACATTTTTGCACTGAAATCTAAAGATGTTTTAAAAAACACTTTTCACAAGAAATA
GTCCTTTGTCATTACATTATTTACTCATGTGTTTGTACATTTTTGTATGTTAATTTATGA
ATGATTTTTTCAGTAAAAAATACATATTCAAGAACCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATATGAGAGAGCAGGTATCCTGCCCTTGAACACGCTGGTAAGTTGTATCATAATGTTT
TCAGAGTTTTGAGCATTTCCTGCTTTAAAAGACCTTCACGAGGGAACATGACACAGAGAA
GTTCTTCTGGCTTTCCTTTGGCACAGGGTGCATAGAGCAATAAAGATTTCTTTCCCCCCT
TCCTCCAGACACCTCTCGGCCTCTGTGCTGGCACTGCCACTTCTCTCTCCGAGGGCTGTG
AGCTGCCTTGAGTTTGATGAGATTACGATGCCCTCTGGAAGGGTTTGCCAGGTCAGACTG
ATCCTTGGTCAAGGATGGCGCGTGTACCCTCGGCAGCGTTGTGAAAAGTGATTCCATTGG
AAGCCTGTCGTTAACATATTTGCCACCAAGAACAAAATGTTGGCCAAAGGCTAACACGCG
ATTTCAAAAAGAAAATGCTGATCTGAGGACAAAAGGAAAAGTCTCCTTCCACTGTTCCAA
GTAGCGTCATCTTGCCATCATGTGGGAAGTTGTTCGATCGTGTGAAATCTCTCACTGTGC
ACTGTGAGTCGTGTATCCACAGAGCTGAGGAGTATCACGTGGGGAAACGTAAAAGTTAAA
AACAACAGCCAGGCCCGTGTGCTGTTAGTAGTGTGAAATTCTCATGTTTTTTTTAAAAAA
AAAAAAAACCAATAAGAACCAAATGTGACCTTGTCCTTTTGGCAGCTGAAATTCTTTAAG
GCTACCGATGGATGACCCCTTAAATCAGTCTCTCTTGATTTTCTGTGCCAGGAAGAGTTT
TCCTTGCACACCGTGTTTGGTTTTTTGTTTGGGGCGGGCGGGGGGTGGGGTTGGCTGCAA
AACTATTCCTTTTGACATTACAGGGACTTGTGAGAGCTCCTCTACACAGACATGAATAGC
CAAGCAAGAGCCACACGTACTGATTGTATCCACTCACCATCGACGATGGCATTGAACGTA
GCTAGCTTATTTCCATCACTACAGTTTTTTGAGCTTGCTGTTATGTTTTAAGAGGTGCCA
GGGGTACATTTTTGCACTGAAATCTAAAGATGTTTTAAAAAACACTTTTCACAAGAAATA
GTCCTTTGTCATTACATTATTTACTCATGTGTTTGTACATTTTTGTATGTTAATTTATGA
ATGATTTTTTCAGTAAAAAATACATATTCAAGAACCAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-325, gnl|bosTau2|chr13 (58036001-58036324)
               

               
               1-325, gnl|Hg17|chr20 (47684069-47683687)
               

               
               1-325, gnl|Mm7|chr2 (167040234-167039883)
               


               
               357-1179, gnl|bosTau2|chr13 (58036324-58037133)
               

               
               357-1179, gnl|Hg17|chr20 (47683687-47682889)
               

               
               357-1179, gnl|Mm7|chr2 (167039883-167039098)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-325, gnl|bosTau2|chr13 (58036001-58036324)
               

               
               1-325, gnl|Hg17|chr20 (47684069-47683687)
               

               
               1-325, gnl|Mm7|chr2 (167040234-167039883)
               


               
               357-1179, gnl|bosTau2|chr13 (58036324-58037133)
               

               
               357-1179, gnl|Hg17|chr20 (47683687-47682889)
               

               
               357-1179, gnl|Mm7|chr2 (167039883-167039098)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               cut (0.339847)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               spc (0.226732)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cut (0.339847)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               spc (0.226732)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

	1-325, gnl\|bosTau2\|chr13 (58036001-58036324)
	1-325, gnl\|Hg17\|chr20 (47684069-47683687)
	1-325, gnl\|Mm7\|chr2 (167040234-167039883)

	357-1179, gnl\|bosTau2\|chr13 (58036324-58037133)
	357-1179, gnl\|Hg17\|chr20 (47683687-47682889)
	357-1179, gnl\|Mm7\|chr2 (167039883-167039098)

	amn (0.417711)
	cut (0.339847)
	fce (0.271592)
	pla (0.267344)
	lyg (0.266205)
	spc (0.226732)
	nlu (0.191681)
	sin (0.174948)
	rec (0.17307)
	cje (0.165235)
	tbr (0.154178)
	lun (0.150489)
	lin (0.145603)
	pty (0.142714)
	thg (0.126791)
	bla (0.124347)
	cty (0.10408)