Non-Coding RNA Search

Ss1.1-rspc031_e8.5

Sequence:


               
               GGCCTGCCCACCAGGGACCAGCCCTGCTCCAGGAGGAGAATCCCAGAGACCAGGCCGCAG
TACCTGAGCTGAACTCAGCCAGGTCCCAGACATCAGTGAAGACTGAGGAAGAAGCAGCCC
ATGCTCTTGTCCCAGGAGAGTGGCCACATCTGAATCTGGCTCAAAGGGGGGGTGCTGGGA
ACTCAGCTCGGGAGAAGGTTACAAATCTGAGTCTGATGACTGAAGAAGTAGTAACTAAAG
ATGGATTGTTTAACCCAAAGCAAGAAACTTCTGAAGAAATGGAACCAGGTGCTGAGGCCT
CATGAATAGCCAACAGAGTGGTGCATCAACCAGATGAATGCAGAACTAGGAGAGGCTAAA
TCCGTCCATATTCAAAAATTCTGTGAGAGAGATTGCACACCCCATGCCCCTTGTGGAATT
TCTGTCCCTGTTGAAAGGACAGTTGTGCGTTTGAACACTCTGAAGGACCGTCACCCATGC
GACTTGTGGGCTCGGATGCACGTCTCATCCTTGGAATATGCTGCAGGAGACATTACTCGA
AAAGGGAGAAAAAAAGACAAAGCTCGAGTGAGTGAACTACTCCAAGGCCTCGCATTTTCT
GGTGACTCAGATGTGGAAGAGGATAATGAGCCAGAAACCCAGCCTGCCTCCAAACGGCTA
AAAGTGTCAAGTGTCCCAGAGAAGAACTGGACCAAAAGAGACATTAAACCCAACTTTCCA
AGCTGGTCAGCCCTGGATTCTGGACTTTTGAATCTCAAGAGTGAAAAGTTGAACCCAGTA
GAGCTCTTTGAGTTATTTTTTGATGATGAAACATTCAACTTGATTGTCAGTGAAACTAAT
AATTATGCTTCTCAGAAAAATGTCAACTTGGAAGTCACAGTTCAGGAAATAAGGTGTGTG
TTTGGTGTCCTGCTTTTGAGTGGACTTGTGAGGCGTCCTCAACGGGGAATGTATTGGGAA
ATGTCTGATGTCGATCAGAACCTGGTTAAAGATGCAATCAGAAGGGACAGATTTGAATTG
ATTTTCTCATACCTGCATTTTGCAGATAATAGCCACCTAGATCAAAAAGATAAATTTACA
AAATTGAGGCCTCTCATAAAGCAAATGAATAAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTGCCCACCAGGGACCAGCCCTGCTCCAGGAGGAGAATCCCAGAGACCAGGCCGCAG
TACCTGAGCTGAACTCAGCCAGGTCCCAGACATCAGTGAAGACTGAGGAAGAAGCAGCCC
ATGCTCTTGTCCCAGGAGAGTGGCCACATCTGAATCTGGCTCAAAGGGGGGGTGCTGGGA
ACTCAGCTCGGGAGAAGGTTACAAATCTGAGTCTGATGACTGAAGAAGTAGTAACTAAAG
ATGGATTGTTTAACCCAAAGCAAGAAACTTCTGAAGAAATGGAACCAGGTGCTGAGGCCT
CATGAATAGCCAACAGAGTGGTGCATCAACCAGATGAATGCAGAACTAGGAGAGGCTAAA
TCCGTCCATATTCAAAAATTCTGTGAGAGAGATTGCACACCCCATGCCCCTTGTGGAATT
TCTGTCCCTGTTGAAAGGACAGTTGTGCGTTTGAACACTCTGAAGGACCGTCACCCATGC
GACTTGTGGGCTCGGATGCACGTCTCATCCTTGGAATATGCTGCAGGAGACATTACTCGA
AAAGGGAGAAAAAAAGACAAAGCTCGAGTGAGTGAACTACTCCAAGGCCTCGCATTTTCT
GGTGACTCAGATGTGGAAGAGGATAATGAGCCAGAAACCCAGCCTGCCTCCAAACGGCTA
AAAGTGTCAAGTGTCCCAGAGAAGAACTGGACCAAAAGAGACATTAAACCCAACTTTCCA
AGCTGGTCAGCCCTGGATTCTGGACTTTTGAATCTCAAGAGTGAAAAGTTGAACCCAGTA
GAGCTCTTTGAGTTATTTTTTGATGATGAAACATTCAACTTGATTGTCAGTGAAACTAAT
AATTATGCTTCTCAGAAAAATGTCAACTTGGAAGTCACAGTTCAGGAAATAAGGTGTGTG
TTTGGTGTCCTGCTTTTGAGTGGACTTGTGAGGCGTCCTCAACGGGGAATGTATTGGGAA
ATGTCTGATGTCGATCAGAACCTGGTTAAAGATGCAATCAGAAGGGACAGATTTGAATTG
ATTTTCTCATACCTGCATTTTGCAGATAATAGCCACCTAGATCAAAAAGATAAATTTACA
AAATTGAGGCCTCTCATAAAGCAAATGAATAAAAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|59858553|ref|NP_001012311.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|59858553|ref|NP_001012311.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               695-814, - strand, RNAz p=0.528599
               

               
               895-1014, + strand, RNAz p=0.527954

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               695-814, - strand, RNAz p=0.528599
               

               
               895-1014, + strand, RNAz p=0.527954

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               379-1116, gnl|bosTau2|chr23 (25672905-25672168)
               

               
               379-1116, gnl|Hg17|chr6 (28376469-28377206)
               

               
               379-1116, gnl|Mm7|chr13 (20789637-20788922)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               379-1116, gnl|bosTau2|chr23 (25672905-25672168)
               

               
               379-1116, gnl|Hg17|chr6 (28376469-28377206)
               

               
               379-1116, gnl|Mm7|chr13 (20789637-20788922)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               mas (0.210305)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	695-814, - strand, RNAz p=0.528599
	895-1014, + strand, RNAz p=0.527954

	379-1116, gnl\|bosTau2\|chr23 (25672905-25672168)
	379-1116, gnl\|Hg17\|chr6 (28376469-28377206)
	379-1116, gnl\|Mm7\|chr13 (20789637-20788922)

	mas (0.210305)
	ssp (0.13552)
	ret (0.128733)
	bla (0.124347)
	spc (0.113366)