Non-Coding RNA Search

Ss1.1-rspc031_g19.5

Sequence:


               
               ATTTTGTGAAGACATGCAAATCAAAAGAGGACTTAATGTAAAATAAAGACTGCATATTAA
CTCTAAGGAAAAATACCCCACATTTTTAATACGAGAATAAAGATCAACTCTGCTCTCTCA
GGCTTTTTTAAAAAGCCATTCCTGTATGTGCTTTAGGTATTTTTTATTTCTGCAAGTTGG
ATGTGGTAAGTGAGGAGTGATCAGGCTTTTTTTTCCCCTTCTTCAAAAGTATTTTGAAAG
TGTTTGATTATGTGTTAAGACTTGTCTAAAATAAATTAGCCACAAAGGCTATCTCCAGTC
TCTCCACCCCCAAACAAACAAACAAACCTCTCCCCTCGCCCCAGGCAAGCCCCTCTTATC
TGATGTTGAGAAGTAGCCTGGTTATCTTGTCTGACAAGGCCTGGTTCTGAAAGAAATTCC
CTCTAGCGATTAAATATATGTTTGCAAGTTCAACAGATTCGAACACGGACAGCTTTGTTT
AAACTAATACAGTGAAGGAAGGGAGAAGAAGAAAAAAAAAAAAAAAAGCGTCAGCTGGGA
TGATATTAATTCTGCTCCCTAACAGCTGCTAGAGGAGACTTGCAAAGGAAGCCTTCTGCT
GAGCTGGCTTTGGGGGCCTGAGATGGGTGAGGAAGGCCACCCTGAAAGATAGGAACCTCA
AATTCAGTTGCTGGTGGGGGTAAAAAGGAGAAAGGCAAGTGGTCTGGCCTGTCCTTTTAC
AGCCCTATTGGTGGAAGCACTCGTTGTGGCCTATAAAGTGCATTCAACTTTGTGTCTGCA
GCCTGGTCAAGAAACCGGGGTGACTGGCTGGACCACTGGGCTACTCCCAGTCTTATGTGT
TCATGCCCTTGAGTTTCCCTCACTGGTCAGCAGAGCCACTATAATCCTCGTACAATCTAA
TGCTGGCTGTTGCTCTCAGCAAAACCTTGATTGGCCGTGTTCGTGGTTCTGAGCCTGCTG
GTCTCTCTTTTGTCTTTGCAAGGGGAGGTTGGATGGGCACAAGACTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTGTGAAGACATGCAAATCAAAAGAGGACTTAATGTAAAATAAAGACTGCATATTAA
CTCTAAGGAAAAATACCCCACATTTTTAATACGAGAATAAAGATCAACTCTGCTCTCTCA
GGCTTTTTTAAAAAGCCATTCCTGTATGTGCTTTAGGTATTTTTTATTTCTGCAAGTTGG
ATGTGGTAAGTGAGGAGTGATCAGGCTTTTTTTTCCCCTTCTTCAAAAGTATTTTGAAAG
TGTTTGATTATGTGTTAAGACTTGTCTAAAATAAATTAGCCACAAAGGCTATCTCCAGTC
TCTCCACCCCCAAACAAACAAACAAACCTCTCCCCTCGCCCCAGGCAAGCCCCTCTTATC
TGATGTTGAGAAGTAGCCTGGTTATCTTGTCTGACAAGGCCTGGTTCTGAAAGAAATTCC
CTCTAGCGATTAAATATATGTTTGCAAGTTCAACAGATTCGAACACGGACAGCTTTGTTT
AAACTAATACAGTGAAGGAAGGGAGAAGAAGAAAAAAAAAAAAAAAAGCGTCAGCTGGGA
TGATATTAATTCTGCTCCCTAACAGCTGCTAGAGGAGACTTGCAAAGGAAGCCTTCTGCT
GAGCTGGCTTTGGGGGCCTGAGATGGGTGAGGAAGGCCACCCTGAAAGATAGGAACCTCA
AATTCAGTTGCTGGTGGGGGTAAAAAGGAGAAAGGCAAGTGGTCTGGCCTGTCCTTTTAC
AGCCCTATTGGTGGAAGCACTCGTTGTGGCCTATAAAGTGCATTCAACTTTGTGTCTGCA
GCCTGGTCAAGAAACCGGGGTGACTGGCTGGACCACTGGGCTACTCCCAGTCTTATGTGT
TCATGCCCTTGAGTTTCCCTCACTGGTCAGCAGAGCCACTATAATCCTCGTACAATCTAA
TGCTGGCTGTTGCTCTCAGCAAAACCTTGATTGGCCGTGTTCGTGGTTCTGAGCCTGCTG
GTCTCTCTTTTGTCTTTGCAAGGGGAGGTTGGATGGGCACAAGACTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               81-180, - strand, RNAz p=0.560623

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-180, - strand, RNAz p=0.560623

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1008, gnl|bosTau2|chr10 (51105353-51104336)
               

               
               2-1008, gnl|Hg17|chr14 (72198823-72197782)
               

               
               2-1008, gnl|Mm7|chr12 (81257673-81256631)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1008, gnl|bosTau2|chr10 (51105353-51104336)
               

               
               2-1008, gnl|Hg17|chr14 (72198823-72197782)
               

               
               2-1008, gnl|Mm7|chr12 (81257673-81256631)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               isp (0.150376)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

	2-1008, gnl\|bosTau2\|chr10 (51105353-51104336)
	2-1008, gnl\|Hg17\|chr14 (72198823-72197782)
	2-1008, gnl\|Mm7\|chr12 (81257673-81256631)