Ss1.1-rspc031_g8.5
|
GAGCAACCGCTTTGGTTTCCTTCCCAGAAACGATGCAAAGCAACAGGTGGAGATAGTCTG
GTCTTTACCCTGCTGTGTGTGCCTCTGTAGCTCCTGCTGACACACGTCTGGGACAACAGC
CTCGCCCCACTCCTCTATTCCCCGTCCCCTCGTAGCTTTATTCCTTGCATTCTTTGGGTC
TTCTGAGCAGTGGGTGGTGAGGTGACAGGGGAGGAACCAGCAGTTTGTAGCCTAGGAGCT
GCCTCAATGCCTCTCTCAGAAAACGGCAAAGGGTTCCTCCCTCCTCACTCAGGCCTGATC
CATCGTGCCCTTGACTTTGCTGTCCCAAAGGTTCTTAGCTGACTTTGGCTTTCGCATTTG
TTCCTCCCAGAGCTAACTGATAAGGGTGGAGGAGGCAAGCCTCCTCCTTCGGGTCCGTGG
AAAGACAAGAGAGTCACATTCTAGCTTTTGCACAAGGCACTCATGGTCCAGAAGAGGTTA
GGGAATGGTCACTTCTGATTTTCCAAGAGTCAGTCCTTCTCTGCTGACATCTTGATTCCT
TTGGGAAGGCAAGAGTTTTTCTTAATAACTAAAGTCCCTTCATGCGTTAGTTCTTCCTTC
AGTTCTTCTCAGGGGAGCGCTGCCAAGATGGACAGGTGCGGGAACAGTGCTCTGGAGGTG
AAAACAGTTAGAACTGGTTCATGGGACGGGGCGGCTTGCTCAGGAGAGGGGATAATGCAA
GTAAGTCCTTTTTCTTGGAAGACTTTTAATAAGGCCACAGTAGTGACATTGCCCTCACCG
TAATCCTTCTCCGATGTGGTCGTCTTTCTTTACCTTGTGTCTTCTCTTGTAAAGATGAAA
CTCAAAAATAAAATAAATGTGTCAAATTTAAAAAGACGAAGAAAAAGCTAACATAAATGG
TGTGAAATTGCGTAATGCTGTAACGCTAACCTACGATATGTAATGCTATCTTGTATGTTG
AATTTGTTAAAGCACCACACAAGTGCAGAATAAAGACTGATTCACATTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAGCAACCGCTTTGGTTTCCTTCCCAGAAACGATGCAAAGCAACAGGTGGAGATAGTCTG
GTCTTTACCCTGCTGTGTGTGCCTCTGTAGCTCCTGCTGACACACGTCTGGGACAACAGC
CTCGCCCCACTCCTCTATTCCCCGTCCCCTCGTAGCTTTATTCCTTGCATTCTTTGGGTC
TTCTGAGCAGTGGGTGGTGAGGTGACAGGGGAGGAACCAGCAGTTTGTAGCCTAGGAGCT
GCCTCAATGCCTCTCTCAGAAAACGGCAAAGGGTTCCTCCCTCCTCACTCAGGCCTGATC
CATCGTGCCCTTGACTTTGCTGTCCCAAAGGTTCTTAGCTGACTTTGGCTTTCGCATTTG
TTCCTCCCAGAGCTAACTGATAAGGGTGGAGGAGGCAAGCCTCCTCCTTCGGGTCCGTGG
AAAGACAAGAGAGTCACATTCTAGCTTTTGCACAAGGCACTCATGGTCCAGAAGAGGTTA
GGGAATGGTCACTTCTGATTTTCCAAGAGTCAGTCCTTCTCTGCTGACATCTTGATTCCT
TTGGGAAGGCAAGAGTTTTTCTTAATAACTAAAGTCCCTTCATGCGTTAGTTCTTCCTTC
AGTTCTTCTCAGGGGAGCGCTGCCAAGATGGACAGGTGCGGGAACAGTGCTCTGGAGGTG
AAAACAGTTAGAACTGGTTCATGGGACGGGGCGGCTTGCTCAGGAGAGGGGATAATGCAA
GTAAGTCCTTTTTCTTGGAAGACTTTTAATAAGGCCACAGTAGTGACATTGCCCTCACCG
TAATCCTTCTCCGATGTGGTCGTCTTTCTTTACCTTGTGTCTTCTCTTGTAAAGATGAAA
CTCAAAAATAAAATAAATGTGTCAAATTTAAAAAGACGAAGAAAAAGCTAACATAAATGG
TGTGAAATTGCGTAATGCTGTAACGCTAACCTACGATATGTAATGCTATCTTGTATGTTG
AATTTGTTAAAGCACCACACAAGTGCAGAATAAAGACTGATTCACATTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
194-297, - strand, RNAz p=0.999711 |
|
324-436, - strand, RNAz p=0.934088 |
|
338-453, - strand, RNAz p=0.919158 |
|
692-811, - strand, RNAz p=0.904238 |
|
893-1011, - strand, RNAz p=0.850016 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
194-297, - strand, RNAz p=0.999711 |
|
324-436, - strand, RNAz p=0.934088 |
|
338-453, - strand, RNAz p=0.919158 |
|
692-811, - strand, RNAz p=0.904238 |
|
893-1011, - strand, RNAz p=0.850016 |
|
1-1011, gnl|bosTau2|chr3 (10719171-10718155) |
|
1-1011, gnl|canFam2|chr7 (44882175-44881439) |
|
1-1011, gnl|dasNov1|scaffold_6721 (36759-35964) |
|
1-1011, gnl|echTel1|scaffold_160595 (12804-13637) |
|
1-1011, gnl|galGal2|chrE26C13 (119015-119722) |
|
1-1011, gnl|hg17|chr1 (152666835-152667648) |
|
1-1011, gnl|Hg17|chr1 (152667018-152668057) |
|
1-1011, gnl|mm7|chr3 (88859655-88858890) |
|
1-1011, gnl|Mm7|chr3 (88859453-88858506) |
|
1-1011, gnl|monDom2|scaffold_59 (1670554-1669691) |
|
1-1011, gnl|oryCun1|scaffold_212139 (37768-37030) |
|
1-1011, gnl|panTro1|chr1 (134599113-134599927) |
|
1-1011, gnl|rheMac2|chr1 (134452130-134452940) |
|
1-1011, gnl|rn3|chr2 (180823153-180822390) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-1011, gnl|bosTau2|chr3 (10719171-10718155) |
|
1-1011, gnl|canFam2|chr7 (44882175-44881439) |
|
1-1011, gnl|dasNov1|scaffold_6721 (36759-35964) |
|
1-1011, gnl|echTel1|scaffold_160595 (12804-13637) |
|
1-1011, gnl|galGal2|chrE26C13 (119015-119722) |
|
1-1011, gnl|hg17|chr1 (152666835-152667648) |
|
1-1011, gnl|Hg17|chr1 (152667018-152668057) |
|
1-1011, gnl|mm7|chr3 (88859655-88858890) |
|
1-1011, gnl|Mm7|chr3 (88859453-88858506) |
|
1-1011, gnl|monDom2|scaffold_59 (1670554-1669691) |
|
1-1011, gnl|oryCun1|scaffold_212139 (37768-37030) |
|
1-1011, gnl|panTro1|chr1 (134599113-134599927) |
|
1-1011, gnl|rheMac2|chr1 (134452130-134452940) |
|
1-1011, gnl|rn3|chr2 (180823153-180822390) |
|
spc (1.47376) |
|
fco (0.78604) |
|
fhi (0.678311) |
|
fcc (0.593354) |
|
aor (0.585823) |
|
hyp (0.42851) |
|
cbr (0.383926) |
|
fbs (0.350693) |
|
fce (0.271592) |
|
cbe (0.239234) |
|
sto (0.179824) |
|
nco (0.161734) |
|
cst (0.140036) |
|
sug (0.127291) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
ecc (0.115035) |
|
spc (1.47376) |
|
fco (0.78604) |
|
fhi (0.678311) |
|
fcc (0.593354) |
|
aor (0.585823) |
|
hyp (0.42851) |
|
cbr (0.383926) |
|
fbs (0.350693) |
|
fce (0.271592) |
|
cbe (0.239234) |
|
sto (0.179824) |
|
nco (0.161734) |
|
cst (0.140036) |
|
sug (0.127291) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
ecc (0.115035) |
