Non-Coding RNA Search

Ss1.1-rspc031_i11.5

Sequence:


               
               AGCAGTTCTCAGGAGCCCCTGGACTGCCCCGAGAGCGTGTTGTGCTGCCAGCTGAACCCC
GCCCCCCCGGGCAGTGAAAGACCTTGCCCACCTGGGGTTTCTCAGGGCTGGGGAGCAGGG
CTGGGAAGATGCATCAGACTTTGTTAAATTATTAACAAGGTTATATGATTTTGTGTTTCT
TGATGACAAACTTTGTTAAGTTTGGGACTTATTTTCCCATTTGAGAAGTTATAATATGTA
TTTAAAATAAGTTTCCTGCTTAAGTTGTGCCTTTCAGCATGGATGGGTTTAAGGAGCACA
AAGGGTGATGATGGTGGTGAGAGTGGGTTTATTATCAAACCGAAATAGCTGTGGTTTCTC
CAGAGCACTTTTCCTCTACTGAACATGGAGCCATTGTTAAAAGAATTGTGCGTTTTTATT
ATGTAAATTGTATAATATTTTTTGCTTGTTTGATGTTCTATTTTTCTAATAGTTTTCTTA
TGGTTTCTTATATTTGCGCGACTAGATTTAGATTCTGTGCTAACTGCAAATCAGATTGAC
CCCTGCTGGTCCCCCCTGTTTTATCTTAAGGACAAGAGTAGATGTCCATTGCCTTTAAGA
AATGTGAACCTCTGCTCTGTAGCCCGGTTTTGCTGGCAACACTGTACATGGATACCGTAC
TTCATGTTGTAAATCCAACTATTTTGTGGTACATCCCCTATGCTTCCGCAGATCTTAATA
AATTCCGTCTCTGGCAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGTTCTCAGGAGCCCCTGGACTGCCCCGAGAGCGTGTTGTGCTGCCAGCTGAACCCC
GCCCCCCCGGGCAGTGAAAGACCTTGCCCACCTGGGGTTTCTCAGGGCTGGGGAGCAGGG
CTGGGAAGATGCATCAGACTTTGTTAAATTATTAACAAGGTTATATGATTTTGTGTTTCT
TGATGACAAACTTTGTTAAGTTTGGGACTTATTTTCCCATTTGAGAAGTTATAATATGTA
TTTAAAATAAGTTTCCTGCTTAAGTTGTGCCTTTCAGCATGGATGGGTTTAAGGAGCACA
AAGGGTGATGATGGTGGTGAGAGTGGGTTTATTATCAAACCGAAATAGCTGTGGTTTCTC
CAGAGCACTTTTCCTCTACTGAACATGGAGCCATTGTTAAAAGAATTGTGCGTTTTTATT
ATGTAAATTGTATAATATTTTTTGCTTGTTTGATGTTCTATTTTTCTAATAGTTTTCTTA
TGGTTTCTTATATTTGCGCGACTAGATTTAGATTCTGTGCTAACTGCAAATCAGATTGAC
CCCTGCTGGTCCCCCCTGTTTTATCTTAAGGACAAGAGTAGATGTCCATTGCCTTTAAGA
AATGTGAACCTCTGCTCTGTAGCCCGGTTTTGCTGGCAACACTGTACATGGATACCGTAC
TTCATGTTGTAAATCCAACTATTTTGTGGTACATCCCCTATGCTTCCGCAGATCTTAATA
AATTCCGTCTCTGGCAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               88-178, + strand, RNAz p=0.993695

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-178, + strand, RNAz p=0.993695

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               88-552, gnl|bosTau2|chr12 (15608857-15609325)
               

               
               88-552, gnl|Hg17|chr13 (28982245-28981756)
               

               
               88-552, gnl|Mm7|chr5 (147222842-147222337)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-552, gnl|bosTau2|chr12 (15608857-15609325)
               

               
               88-552, gnl|Hg17|chr13 (28982245-28981756)
               

               
               88-552, gnl|Mm7|chr5 (147222842-147222337)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               pan (0.471921)
               

               
               ski (0.440205)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.471921)
               

               
               ski (0.440205)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

	88-552, gnl\|bosTau2\|chr12 (15608857-15609325)
	88-552, gnl\|Hg17\|chr13 (28982245-28981756)
	88-552, gnl\|Mm7\|chr5 (147222842-147222337)

	pan (0.471921)
	ski (0.440205)
	tra (0.246184)
	cbe (0.239234)
	ece (0.229305)
	spc (0.226732)
	sag (0.182715)
	cut (0.169924)
	mga (0.160205)
	fco (0.157208)
	ste (0.135208)
	pla (0.133672)
	lyg (0.133103)
	ova (0.129132)
	thg (0.126791)