Non-Coding RNA Search

Ss1.1-rspc031_i16.5

Sequence:


               
               AAAACCCTCTGATAGTGGCTTTTTGCAAGTGTAAAACAGATTAAGTGGATAGATTATGTT
AGCATGCTGCTTAGTTTTCTTATTTAAATAGTGCTTAAAATTTTTTGCTCCTTATGTTTA
GGAACAGCAATTAGAAGTGTACTAACTATTGCCAGAAGGTTTTATAAAAATGAAGATCAG
CAAATGTGGAGTGATCTCCTTCCATAGGATACACTTGAGATATAGGAGTCATATTTTTTA
AAATCTTTGTTTTAGGAGTTTACATATAGTGTGGTATTTATTGTTTAGGAATATAAGTTT
ACCTAAAACAGTAATCTATTTTTTCTTTTGTTATAATCTTAAGCAACAAATATAAACCCC
TAATGAATCTATGAATCTATTTATGTCTATAAATTTAAATTCACTTAAACATTTGTTATT
GTAATATATTTACTTTGACATGGTTGTAACCACTTTATATTTTTAATTTTGCTTTTTTCA
CTTAATATTTTATATATACATTTCCATGTACTGATAGAGTCCATGTATTTAAATTTTTAT
AGAATTATATAGTTTTTGAAAAATATAGTTCGTAGACTTTCATTTTGTAGCTGTAGAGTA
TTTGATTATATTTAGTTTTACACAGCTACTTCTCTAAAGTTAGGTGTTTATTGGCTTTTA
ATTTTTCATTATCATAATAGTGATTTTTTTTTCAAGTTGGGGTGAATGGTCCTAGTTATA
AAGTTAATGCAAAATAAGGATTTAGAAGATACTTCTTTATCATGTATGGTCACAACCTGT
TTTGTTTTTGTAAACACTGGAAGGCCTTTTAATGAAAGAGTTCATTTTGTATTTGGACTA
AGATTCTTGAGCTCATCTCACCAAGTATTTTTCACAAGATATAACATAGCTTCTATAAAA
GTAGCTTCATGCTTATTTGTGGCTTATTCTTGATGCTTAGGATGAAAAGCATTGTCTTTT
AAAATTGGAGAATAAAATGTAAAATACGGATTTTGATTTTTTTCTGTGTTCATGTAAGGG
ATATAGTTAACATTTTTTCATAGGCTATTGCTTATATATTCTTGCAGCATTTCTAGTTAA
GAGGTTATTAGGTATGTAATTATATTTTTAACTGAATGTCAGATGGTCTTAAGGCCACAG
GGTGCAGGTAGCCCTTGGTTTGTAAGTACCACTGATCCAGGGATCATTGTCAAAAAATGT
TAGTATTGTGATTCATCTTGCTTTTTACTTTTTAATTTCCAAATTGTAAGTGTTCCCTTT
TTTGGGCAAATTCTTATAAAAATGTTTATTGTAAAGTTATATATTTTGTCTATGATGAGA
TTATGCACTTCCCAGTTGGGATTTTACATCAGGGTTTTTAGGCATTCTAAAAAATACCTA
GTTATTAAATCAAAATATTTATACTGTGCCTACTGTATGCATGAGTTACTTATGAGGTAT
ATTTTGAATGATAGCATATTGTAAGAAAAAGGTAAATAAAACTTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACCCTCTGATAGTGGCTTTTTGCAAGTGTAAAACAGATTAAGTGGATAGATTATGTT
AGCATGCTGCTTAGTTTTCTTATTTAAATAGTGCTTAAAATTTTTTGCTCCTTATGTTTA
GGAACAGCAATTAGAAGTGTACTAACTATTGCCAGAAGGTTTTATAAAAATGAAGATCAG
CAAATGTGGAGTGATCTCCTTCCATAGGATACACTTGAGATATAGGAGTCATATTTTTTA
AAATCTTTGTTTTAGGAGTTTACATATAGTGTGGTATTTATTGTTTAGGAATATAAGTTT
ACCTAAAACAGTAATCTATTTTTTCTTTTGTTATAATCTTAAGCAACAAATATAAACCCC
TAATGAATCTATGAATCTATTTATGTCTATAAATTTAAATTCACTTAAACATTTGTTATT
GTAATATATTTACTTTGACATGGTTGTAACCACTTTATATTTTTAATTTTGCTTTTTTCA
CTTAATATTTTATATATACATTTCCATGTACTGATAGAGTCCATGTATTTAAATTTTTAT
AGAATTATATAGTTTTTGAAAAATATAGTTCGTAGACTTTCATTTTGTAGCTGTAGAGTA
TTTGATTATATTTAGTTTTACACAGCTACTTCTCTAAAGTTAGGTGTTTATTGGCTTTTA
ATTTTTCATTATCATAATAGTGATTTTTTTTTCAAGTTGGGGTGAATGGTCCTAGTTATA
AAGTTAATGCAAAATAAGGATTTAGAAGATACTTCTTTATCATGTATGGTCACAACCTGT
TTTGTTTTTGTAAACACTGGAAGGCCTTTTAATGAAAGAGTTCATTTTGTATTTGGACTA
AGATTCTTGAGCTCATCTCACCAAGTATTTTTCACAAGATATAACATAGCTTCTATAAAA
GTAGCTTCATGCTTATTTGTGGCTTATTCTTGATGCTTAGGATGAAAAGCATTGTCTTTT
AAAATTGGAGAATAAAATGTAAAATACGGATTTTGATTTTTTTCTGTGTTCATGTAAGGG
ATATAGTTAACATTTTTTCATAGGCTATTGCTTATATATTCTTGCAGCATTTCTAGTTAA
GAGGTTATTAGGTATGTAATTATATTTTTAACTGAATGTCAGATGGTCTTAAGGCCACAG
GGTGCAGGTAGCCCTTGGTTTGTAAGTACCACTGATCCAGGGATCATTGTCAAAAAATGT
TAGTATTGTGATTCATCTTGCTTTTTACTTTTTAATTTCCAAATTGTAAGTGTTCCCTTT
TTTGGGCAAATTCTTATAAAAATGTTTATTGTAAAGTTATATATTTTGTCTATGATGAGA
TTATGCACTTCCCAGTTGGGATTTTACATCAGGGTTTTTAGGCATTCTAAAAAATACCTA
GTTATTAAATCAAAATATTTATACTGTGCCTACTGTATGCATGAGTTACTTATGAGGTAT
ATTTTGAATGATAGCATATTGTAAGAAAAAGGTAAATAAAACTTGACT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1068-1183, - strand, RNAz p=0.576976
               

               
               1295-1413, - strand, RNAz p=0.597215

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1068-1183, - strand, RNAz p=0.576976
               

               
               1295-1413, - strand, RNAz p=0.597215

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-1487, gnl|bosTau2|chr1 (80552686-80551216)
               

               
               9-1487, gnl|Hg17|chr3 (144007964-144009415)
               

               
               9-1487, gnl|Mm7|chr9 (95352383-95350923)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1487, gnl|bosTau2|chr1 (80552686-80551216)
               

               
               9-1487, gnl|Hg17|chr3 (144007964-144009415)
               

               
               9-1487, gnl|Mm7|chr9 (95352383-95350923)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               ret (0.643666)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.643666)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1068-1183, - strand, RNAz p=0.576976
	1295-1413, - strand, RNAz p=0.597215

	9-1487, gnl\|bosTau2\|chr1 (80552686-80551216)
	9-1487, gnl\|Hg17\|chr3 (144007964-144009415)
	9-1487, gnl\|Mm7\|chr9 (95352383-95350923)

	ret (0.643666)
	fcc (0.197785)
	aor (0.195274)
	sag (0.182715)
	gul (0.177588)
	eye (0.170503)
	fco (0.157208)
	ski (0.146735)
	lnt (0.142308)
	kid (0.129735)
	tra (0.123092)
	spc (0.113366)