Non-Coding RNA Search

Ss1.1-rspc031_o10.5

Sequence:


               
               TCTCTCCTAGCAAGACCCGCCTCTCTTCTAGTGCTGGGTAGAAACCCTATGCAGATGCTT
CCAGAAAGGCTTCAAAAGGCTCAGCAGACGGAACAGCTCCTGATCTGCGAGTTCAGTTGC
TGGGCGAGTGGCTGGTGGGCAGAGAACAGCCAGGCCCAGAGCTATGGCTGGGCGTGTTGA
GACCTCCACGGTGGGATGAGAGAGTGAGGTCGCACTGTTCCCAGAGTGACTTCAGAGGCT
TTGTTGGTGCCAATCCCAATATTAAAAGACAAGTACCGCGTGAACCAGAGCTGCGTTTTC
TTGGGTGTTGAGAACTCGTACCGTGGACCCCCTCGCAGCCCCCGAACCCCTGCTCACAGC
AGCAGCGATGGAGACCTGTGATTCTATCCGCATTCATCTCTCTGTCCGTTTCTGAACGAC
TGTGACCATTCGGCAATGAAACAATAGTGATTGAGTCATTAGTAAGGTATCATTTTTCAT
ACGTTTTGTGCCAAAATGCATGGTATTCCACTTAGCCTTCAAAATGTGGCATAGAGTAGT
TTTCAATTCCTTATGTATTCTCCAAAGGAAGTTGAAAATCAGTTTTTACATTTTAATTCG
TTTCTTGTTCAATCTGTTGCACTCTCCCAGGCTGTTTCTTTTCTTTTCTTTTTTTTTTTT
CTTTTTTCCAGCAGAACCCCCTGCATGCAGTTGTATAAGGACATTCCCTAATTCTTGTGA
ATTGTCTCATCCGCAGTAACCACTGACCATCCATCCTCTGTGGGATTATTTAGATTTTCG
GTGAAGTATTTTGTTACCTCAGTCTTGTATCAAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCTCCTAGCAAGACCCGCCTCTCTTCTAGTGCTGGGTAGAAACCCTATGCAGATGCTT
CCAGAAAGGCTTCAAAAGGCTCAGCAGACGGAACAGCTCCTGATCTGCGAGTTCAGTTGC
TGGGCGAGTGGCTGGTGGGCAGAGAACAGCCAGGCCCAGAGCTATGGCTGGGCGTGTTGA
GACCTCCACGGTGGGATGAGAGAGTGAGGTCGCACTGTTCCCAGAGTGACTTCAGAGGCT
TTGTTGGTGCCAATCCCAATATTAAAAGACAAGTACCGCGTGAACCAGAGCTGCGTTTTC
TTGGGTGTTGAGAACTCGTACCGTGGACCCCCTCGCAGCCCCCGAACCCCTGCTCACAGC
AGCAGCGATGGAGACCTGTGATTCTATCCGCATTCATCTCTCTGTCCGTTTCTGAACGAC
TGTGACCATTCGGCAATGAAACAATAGTGATTGAGTCATTAGTAAGGTATCATTTTTCAT
ACGTTTTGTGCCAAAATGCATGGTATTCCACTTAGCCTTCAAAATGTGGCATAGAGTAGT
TTTCAATTCCTTATGTATTCTCCAAAGGAAGTTGAAAATCAGTTTTTACATTTTAATTCG
TTTCTTGTTCAATCTGTTGCACTCTCCCAGGCTGTTTCTTTTCTTTTCTTTTTTTTTTTT
CTTTTTTCCAGCAGAACCCCCTGCATGCAGTTGTATAAGGACATTCCCTAATTCTTGTGA
ATTGTCTCATCCGCAGTAACCACTGACCATCCATCCTCTGTGGGATTATTTAGATTTTCG
GTGAAGTATTTTGTTACCTCAGTCTTGTATCAAGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               71-170, + strand, RNAz p=0.939558

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               71-170, + strand, RNAz p=0.939558

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014636, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014636, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               34-334, gnl|bosTau2|chr11 (77989628-77989331)
               

               
               34-334, gnl|Hg17|chr9 (127064068-127064395)
               

               
               34-334, gnl|Mm7|chr2 (33141628-33141312)
               


               
               335-642, gnl|bosTau2|chr11 (77989295-77988993)
               

               
               335-642, gnl|Hg17|chr9 (127064432-127064739)
               

               
               335-642, gnl|Mm7|chr2 (33141274-33140986)
               


               
               662-815, gnl|bosTau2|chr11 (77988996-77988842)
               

               
               662-815, gnl|canFam2|chr9 (59424791-59424210)
               

               
               662-815, gnl|echTel1|scaffold_322110 (1637-1068)
               

               
               662-815, gnl|galGal2|chr17 (88271-87717)
               

               
               662-815, gnl|hg17|chr9 (127064467-127065036)
               

               
               662-815, gnl|Hg17|chr9 (127064736-127064891)
               

               
               662-815, gnl|loxAfr1|scaffold_24002 (1176-613)
               

               
               662-815, gnl|mm7|chr2 (33141241-33140694)
               

               
               662-815, gnl|Mm7|chr2 (33140989-33140838)
               

               
               662-815, gnl|monDom2|scaffold_38 (22746547-22747131)
               

               
               662-815, gnl|oryCun1|scaffold_193623 (3988-3498)
               

               
               662-815, gnl|panTro1|chr11 (111877146-111877715)
               

               
               662-815, gnl|rheMac2|chr15 (99361926-99361358)
               

               
               662-815, gnl|rn3|chr3 (12039751-12039219)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-334, gnl|bosTau2|chr11 (77989628-77989331)
               

               
               34-334, gnl|Hg17|chr9 (127064068-127064395)
               

               
               34-334, gnl|Mm7|chr2 (33141628-33141312)
               


               
               335-642, gnl|bosTau2|chr11 (77989295-77988993)
               

               
               335-642, gnl|Hg17|chr9 (127064432-127064739)
               

               
               335-642, gnl|Mm7|chr2 (33141274-33140986)
               


               
               662-815, gnl|bosTau2|chr11 (77988996-77988842)
               

               
               662-815, gnl|canFam2|chr9 (59424791-59424210)
               

               
               662-815, gnl|echTel1|scaffold_322110 (1637-1068)
               

               
               662-815, gnl|galGal2|chr17 (88271-87717)
               

               
               662-815, gnl|hg17|chr9 (127064467-127065036)
               

               
               662-815, gnl|Hg17|chr9 (127064736-127064891)
               

               
               662-815, gnl|loxAfr1|scaffold_24002 (1176-613)
               

               
               662-815, gnl|mm7|chr2 (33141241-33140694)
               

               
               662-815, gnl|Mm7|chr2 (33140989-33140838)
               

               
               662-815, gnl|monDom2|scaffold_38 (22746547-22747131)
               

               
               662-815, gnl|oryCun1|scaffold_193623 (3988-3498)
               

               
               662-815, gnl|panTro1|chr11 (111877146-111877715)
               

               
               662-815, gnl|rheMac2|chr15 (99361926-99361358)
               

               
               662-815, gnl|rn3|chr3 (12039751-12039219)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.45861)
               

               
               sag (0.182715)
               

               
               mga (0.160205)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               sag (0.182715)
               

               
               mga (0.160205)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	34-334, gnl\|bosTau2\|chr11 (77989628-77989331)
	34-334, gnl\|Hg17\|chr9 (127064068-127064395)
	34-334, gnl\|Mm7\|chr2 (33141628-33141312)

	335-642, gnl\|bosTau2\|chr11 (77989295-77988993)
	335-642, gnl\|Hg17\|chr9 (127064432-127064739)
	335-642, gnl\|Mm7\|chr2 (33141274-33140986)

	662-815, gnl\|bosTau2\|chr11 (77988996-77988842)
	662-815, gnl\|canFam2\|chr9 (59424791-59424210)
	662-815, gnl\|echTel1\|scaffold_322110 (1637-1068)
	662-815, gnl\|galGal2\|chr17 (88271-87717)
	662-815, gnl\|hg17\|chr9 (127064467-127065036)
	662-815, gnl\|Hg17\|chr9 (127064736-127064891)
	662-815, gnl\|loxAfr1\|scaffold_24002 (1176-613)
	662-815, gnl\|mm7\|chr2 (33141241-33140694)
	662-815, gnl\|Mm7\|chr2 (33140989-33140838)
	662-815, gnl\|monDom2\|scaffold_38 (22746547-22747131)
	662-815, gnl\|oryCun1\|scaffold_193623 (3988-3498)
	662-815, gnl\|panTro1\|chr11 (111877146-111877715)
	662-815, gnl\|rheMac2\|chr15 (99361926-99361358)
	662-815, gnl\|rn3\|chr3 (12039751-12039219)

	ece (0.45861)
	sag (0.182715)
	mga (0.160205)
	ecc (0.115035)
	spc (0.113366)