Ss1.1-rspc031_p15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGAATCGGATCCCTATGGAGGTGGCATAGGCGATATCCCAGAGCTGAGAGCATCACCCG GCCCCCGAATCCTTCTTTCCTCTATTTTGTTTTTCATTTTCCCTCCTCCTCCCTCTCCCC TTACCCTTTCCCCTTCCAGTCCGCGACGACTGGCTCTTGACCCTGTTCAGGCCTCTGTGA AGGCTCTTGGTTACTTCCCTTCTACCCAGTCCCTTAAATTTATTTTTTTGAAGAGTGCAT TTCAAGCTGCCAAGGTGGAGAGAGTGATTGCAGAAGGGAGTGCTGCTCAATTCAGGTTTA ATAAGTCTATTGAGGAAGACCTACTCTTATGTGAATCTTTGCAGAGTAATGCCACTGGTG AAGAAATTTTCAACTGCATCAACAGTTTTATGCAGAAACATGAAATTGAATGGGAAAAAT GTGTTGATGTTTGTAGTGATGCTTCTAGGGCAATGGACGGGAAAATTGCTGAGGCTGTCA CCTTGATAAAATATGTGGCTCCCGAAAGCACCAGTAGTCACTGCCTATTATACAGACATG CACTAGCAGTTAAAATAATGCCTACATCTCTGAAAAATGTGCTAGATCAGGCAGTACAAA TCATCAATTATATCAAAGCTCGACCGCATCAATCCAGACTATTAAAAATTTTATGTGAAG AGATGGGTGCCCAGCACACAGCACTTCTTCTAAATACAGAAGTGAGGTGGCTTTCCCGAG GTAAGGTTCTTGTAAGACTTTTTGAGCTTCGTCGTGAACTCTTGGTTTTCATGGATTCTG CGTTTCGACTGTCTGACTGTTTAACAAATTCATCTTGGCTGCTAAGACTTGCATATCTTG CAGATATTTTCACTAAATTAAATGAGGTTAATATGTCAATGCAGGGAAAAAATGTGACAG TTTTTACAGTATTTGATAAAATGTCCTCACTATTAAGAAAATTGGAATTTTGGGCCTCAT CTGTAGAAGAAGAAAACTTTGATTGCTTTCCTACACTCAGTGACTTTTTGACTGAAATCA ATTCCACAGTTGATAAAGATATTTGCAGTGCCATCGTGCAGCACCTAAGGGGTTTGCGCT CTACTCTGTTAAAATATTTTCCTGTAACAAATGACAGTAATGCTTGGGTTAGAAATCCAT TTACAGTAACTGTTAAACCAACCTCATTGGTAGCACGGGACTATGAGAGCCTGATTGATT TAACATCTGATTCTCAAGTAAAACAAAATTTCAGTGAACTTTCACTAAATGACTTTTGGA GTAGCCTAATTCAAGAGTACCCAGGCATTGCCAGGCGTGCAGTTCGTGTACTTCTTCCTT TTGCTACAATGCACCTCTGTGAAACAGGGTTTTCATATTATGCTGCAACAAAAACGAAAT ACAGGAAAAGACTTGATGCTGCTCCTCATATGCGGATCCGACTTAGCAACATTACACCTA ATATTAAGCGGATATGTGATAAAAAGACACAAAAACACTGTTCTCATTAAAATTGGAAGG TTTTGCATGTGTCTTGATAACCAAATATAAGATGAGAATAAAAATGATTTACTTCAAAAA TGGTATTTTGGGATTTTAAATAAAATGATTAAATTTTTCATAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGAATCGGATCCCTATGGAGGTGGCATAGGCGATATCCCAGAGCTGAGAGCATCACCCG GCCCCCGAATCCTTCTTTCCTCTATTTTGTTTTTCATTTTCCCTCCTCCTCCCTCTCCCC TTACCCTTTCCCCTTCCAGTCCGCGACGACTGGCTCTTGACCCTGTTCAGGCCTCTGTGA AGGCTCTTGGTTACTTCCCTTCTACCCAGTCCCTTAAATTTATTTTTTTGAAGAGTGCAT TTCAAGCTGCCAAGGTGGAGAGAGTGATTGCAGAAGGGAGTGCTGCTCAATTCAGGTTTA ATAAGTCTATTGAGGAAGACCTACTCTTATGTGAATCTTTGCAGAGTAATGCCACTGGTG AAGAAATTTTCAACTGCATCAACAGTTTTATGCAGAAACATGAAATTGAATGGGAAAAAT GTGTTGATGTTTGTAGTGATGCTTCTAGGGCAATGGACGGGAAAATTGCTGAGGCTGTCA CCTTGATAAAATATGTGGCTCCCGAAAGCACCAGTAGTCACTGCCTATTATACAGACATG CACTAGCAGTTAAAATAATGCCTACATCTCTGAAAAATGTGCTAGATCAGGCAGTACAAA TCATCAATTATATCAAAGCTCGACCGCATCAATCCAGACTATTAAAAATTTTATGTGAAG AGATGGGTGCCCAGCACACAGCACTTCTTCTAAATACAGAAGTGAGGTGGCTTTCCCGAG GTAAGGTTCTTGTAAGACTTTTTGAGCTTCGTCGTGAACTCTTGGTTTTCATGGATTCTG CGTTTCGACTGTCTGACTGTTTAACAAATTCATCTTGGCTGCTAAGACTTGCATATCTTG CAGATATTTTCACTAAATTAAATGAGGTTAATATGTCAATGCAGGGAAAAAATGTGACAG TTTTTACAGTATTTGATAAAATGTCCTCACTATTAAGAAAATTGGAATTTTGGGCCTCAT CTGTAGAAGAAGAAAACTTTGATTGCTTTCCTACACTCAGTGACTTTTTGACTGAAATCA ATTCCACAGTTGATAAAGATATTTGCAGTGCCATCGTGCAGCACCTAAGGGGTTTGCGCT CTACTCTGTTAAAATATTTTCCTGTAACAAATGACAGTAATGCTTGGGTTAGAAATCCAT TTACAGTAACTGTTAAACCAACCTCATTGGTAGCACGGGACTATGAGAGCCTGATTGATT TAACATCTGATTCTCAAGTAAAACAAAATTTCAGTGAACTTTCACTAAATGACTTTTGGA GTAGCCTAATTCAAGAGTACCCAGGCATTGCCAGGCGTGCAGTTCGTGTACTTCTTCCTT TTGCTACAATGCACCTCTGTGAAACAGGGTTTTCATATTATGCTGCAACAAAAACGAAAT ACAGGAAAAGACTTGATGCTGCTCCTCATATGCGGATCCGACTTAGCAACATTACACCTA ATATTAAGCGGATATGTGATAAAAAGACACAAAAACACTGTTCTCATTAAAATTGGAAGG TTTTGCATGTGTCTTGATAACCAAATATAAGATGAGAATAAAAATGATTTACTTCAAAAA TGGTATTTTGGGATTTTAAATAAAATGATTAAATTTTTCATAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 374-493, - strand, RNAz p=0.853149 | |
| 1254-1373, + strand, RNAz p=0.566807 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 374-493, - strand, RNAz p=0.853149 | |
| 1254-1373, + strand, RNAz p=0.566807 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-183, gnl|bosTau2|chr15 (26859903-26859727) | |
| 1-183, gnl|canFam2|chr21 (37204028-37204185) | |
| 1-183, gnl|canFam2|chr21 (37203806-37204148) | |
| 1-183, gnl|dasNov1|scaffold_1513 (139432-139249) | |
| 1-183, gnl|echTel1|scaffold_309040 (8204-8042) | |
| 1-183, gnl|echTel1|scaffold_309040 (8425-8079) | |
| 1-183, gnl|hg17|chr11 (10835755-10836126) | |
| 1-183, gnl|Hg17|chr11 (10836155-10835984) | |
| 1-183, gnl|hg17|chr8 (106345747-106345921) | |
| 1-183, gnl|loxAfr1|scaffold_3868 (97711-97887) | |
| 1-183, gnl|loxAfr1|scaffold_3868 (97470-97830) | |
| 1-183, gnl|mm7|chr7 (107038043-107038188) | |
| 1-183, gnl|mm7|chr7 (107037827-107038152) | |
| 1-183, gnl|Mm7|chr7 (107038180-107038033) | |
| 1-183, gnl|monDom2|scaffold_4 (69559186-69559373) | |
| 1-183, gnl|oryCun1|scaffold_199582 (143102-143256) | |
| 1-183, gnl|oryCun1|scaffold_199582 (142877-143219) | |
| 1-183, gnl|panTro1|chr7 (108729984-108730158) | |
| 1-183, gnl|panTro1|chr9 (11071112-11071483) | |
| 1-183, gnl|rheMac2|chr14 (61088546-61088190) | |
| 1-183, gnl|rheMac2|chr8 (107765618-107765792) | |
| 1-183, gnl|rn3|chr1 (81604118-81603947) | |
| 1-183, gnl|rn3|chr1 (169000740-169001073) | |
| 294-1602, gnl|bosTau2|chr15 (26855936-26854626) | |
| 294-1602, gnl|Hg17|chr11 (10832183-10830873) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-183, gnl|bosTau2|chr15 (26859903-26859727) | |
| 1-183, gnl|canFam2|chr21 (37204028-37204185) | |
| 1-183, gnl|canFam2|chr21 (37203806-37204148) | |
| 1-183, gnl|dasNov1|scaffold_1513 (139432-139249) | |
| 1-183, gnl|echTel1|scaffold_309040 (8204-8042) | |
| 1-183, gnl|echTel1|scaffold_309040 (8425-8079) | |
| 1-183, gnl|hg17|chr11 (10835755-10836126) | |
| 1-183, gnl|Hg17|chr11 (10836155-10835984) | |
| 1-183, gnl|hg17|chr8 (106345747-106345921) | |
| 1-183, gnl|loxAfr1|scaffold_3868 (97711-97887) | |
| 1-183, gnl|loxAfr1|scaffold_3868 (97470-97830) | |
| 1-183, gnl|mm7|chr7 (107038043-107038188) | |
| 1-183, gnl|mm7|chr7 (107037827-107038152) | |
| 1-183, gnl|Mm7|chr7 (107038180-107038033) | |
| 1-183, gnl|monDom2|scaffold_4 (69559186-69559373) | |
| 1-183, gnl|oryCun1|scaffold_199582 (143102-143256) | |
| 1-183, gnl|oryCun1|scaffold_199582 (142877-143219) | |
| 1-183, gnl|panTro1|chr7 (108729984-108730158) | |
| 1-183, gnl|panTro1|chr9 (11071112-11071483) | |
| 1-183, gnl|rheMac2|chr14 (61088546-61088190) | |
| 1-183, gnl|rheMac2|chr8 (107765618-107765792) | |
| 1-183, gnl|rn3|chr1 (81604118-81603947) | |
| 1-183, gnl|rn3|chr1 (169000740-169001073) | |
| 294-1602, gnl|bosTau2|chr15 (26855936-26854626) | |
| 294-1602, gnl|Hg17|chr11 (10832183-10830873) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| liv (0.731422) | |
| cbe (0.717703) | |
| tra (0.492368) | |
| spc (0.453463) | |
| amn (0.417711) | |
| aor (0.390549) | |
| sug (0.381874) | |
| ski (0.29347) | |
| lin (0.291206) | |
| nca (0.273748) | |
| kid (0.259471) | |
| thg (0.253582) | |
| mas (0.210305) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ret (0.128733) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| eje (0.0988338) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.731422) | |
| cbe (0.717703) | |
| tra (0.492368) | |
| spc (0.453463) | |
| amn (0.417711) | |
| aor (0.390549) | |
| sug (0.381874) | |
| ski (0.29347) | |
| lin (0.291206) | |
| nca (0.273748) | |
| kid (0.259471) | |
| thg (0.253582) | |
| mas (0.210305) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ret (0.128733) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| eje (0.0988338) |