Ss1.1-rspc032_c12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGATGGTTCGGGAACTAGATGGCCACGTCCTAAAGTGTGTGAAAGACCAGAATGGCAAT CATGTGGTTCAAAAATGCATTGAATGTGTGCAGCCCCAGTCTTTGCAATTTATCATCGAT GCATTTAAGGGACAGGTGTTTGCTTTGTCCACGCATCCTTATGGCTGCCGAGTGATTCAG AGGATCCTGGAGCACTGTCTCCCTGACCAGACACTCCCTATTTTAGAGGAGCTTCACCAG CACACAGAGCAACTTGTACAGGATCAATATGGGAATTATGTAATCCAGCATGTATTGGAG CATGGTCGTCCTGAGGATAAAAGTAAAATTGTAGCAGAAATTCGAGGCAATGTACTTGTA TTGAGTCAGCACAAATTTGCAAGCAATGTTGTGGAGAAGTGTGTCACTCACGCCTCCCGT ACGGAGCGCGCTGTGCTTATCGATGAGGTGTGCACCATGAATGACGGTCCTCACAGTGCC TTATACACCATGATGAAGGACCAGTACGCCAACTACGTGGTCCAGAAGATGATCGATGTG GCAGAGCCAGCCCAGCGGAAGATCGTCATGCATAAGATCCGGCCCCACATTGCGACTCTT CGCAAGTACACTTACGGCAAGCACATTCTGGCCAAGCTGGAGAAGTACTACATGAAGAAC GGCGTCGACTTGGGGCCCATCTGTGGCCCCCCCAATGGTATTATCTGAGGCAGTGTCACC CCTGTCCCCTCGTTCCCACTGACCTCACTGGCCCACTGGTGAATCCAACCAGCAACCAGA GATGTTCTAATGTAGAATCTGAAATGGGTAAATGGTTGCTCCAGGATTATCCTCTCCTCC AAAAAAAGGAATCAAATCCACAAGTGGAAAGCCTTTGTAAATTTGTTTAATTTTATTACG CATAACATGTACTAATTATTTTTTTTAATTGACTAATTGCCCTGTTGTTTTACTGGTGTA TAGGATACTTGTACATAGGTAACCAATGTACATGGGAGGCCACATATTTTGTTCAATGTT GTATCTATATTCCACATGTGGAAACTTTCAGGGTGGTTGGTTTAACAAAAAAAAAGTTTA AAAAAAAGAAAAAAAAAAGGTTTTTAACTCATTTGCCTCGCCGGCAAGTTTTGCAAATAG CTCTTCCCCACCTCCTCATTTTAGTAAAAAACAAAAACAAACAAAAAAACCTGAGAAGTT TGAATTTTAGTTAAATGACCCCAAACTGGCATTTAACAATGTTTATAAAATATATATATA AATATATATATATATAAATATAAAATGAAAATCATTTCAGAGTTGCTAAAGCTTCAGTTT ATAACATTAAGTTTATGAAACTTCTAAAAATTGCCTTTTTTGGAGCCTATTATGCCGAAG AAGATAATGTAGCCTGTTTTGTGAGGAGGAGATGGGGGCGCCCTGAATGCCTTTCAAGGC CGGGCGGGTGTAATTGTTTACTGCCTACTGGATTTTTTTCTGTTAACATTGAAAGGCAAA AATCTGATTATTTAGCATGAGAAAAAAAAAAAATCCAATTCTGCTTTTGGTCTTGCTTCT ATAAATATATAGTGTATACTTGGTGTAGACTTTGCATATATACAAATTTGTAGTATTTTC TTGTTTTGATGTCTAATCTGTATCTATAATGTACCCTAGTAGTCGAACATACTTTTGATT GTACAATTGTACATTTGTATACCTGTACTGTAAATGTGGAGAAGTATGAATCAACATAAA CACGTTTTTTGGTAAGAAAAGAAAATTAGCCAGCCCTGTGCATTCAGTGTATATTCACAC CTTTTATGGTCGTAGCATATAGTGTTGTATATTGTAAATTGTAATTTCAACCAGAAGTAA ATTTTTTTTTTCTTTTGAAGGAATAAATGTTCTTTATACAGCCTAGTTAACTTTTAAAAA GAAAAAAATAGCTTGGTTTTATTTGTCACCTAGTCAGATAGTAGCAAGATCCTTTCTAAA TGTTATTCAAGATGATTCAGTTCACACTAGTGGGTTTTTTTTTTTTTTTTAATCCTAAAA AAAGTAATGTTTTGCTTATTTTGTGACAGTCAAGAGGACGTGCAAAGTTGAGCCCTGCCC TAACTTTCCTTACAATCAGAGCCCCTCTCACCTTGTAAAGTGTGAATTGCCCTTCCTTTT TGTACAGAAGATGAACTGTATTTTGCATTTTGTCTACTTGTAAGTGAATGTAACATACTG TCAATTTTCCTTGTTTGAATATAGAATTGTAACACTACACGGTGTACATTTCCAGAGCCT TGTGTATATTTCCAATGAACTTTTTTGCAAGCACACTTGTAACCATATGTGTATAATTAA CAAACCTGTGTATGCTTATGCCTGGGCAACTATTTTTTGTAACTCTTGTGTAGATTGTCT CTAAACAATGTGTGATCTTTATTTTGAAAAATACAGAACTTTGGAATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGATGGTTCGGGAACTAGATGGCCACGTCCTAAAGTGTGTGAAAGACCAGAATGGCAAT CATGTGGTTCAAAAATGCATTGAATGTGTGCAGCCCCAGTCTTTGCAATTTATCATCGAT GCATTTAAGGGACAGGTGTTTGCTTTGTCCACGCATCCTTATGGCTGCCGAGTGATTCAG AGGATCCTGGAGCACTGTCTCCCTGACCAGACACTCCCTATTTTAGAGGAGCTTCACCAG CACACAGAGCAACTTGTACAGGATCAATATGGGAATTATGTAATCCAGCATGTATTGGAG CATGGTCGTCCTGAGGATAAAAGTAAAATTGTAGCAGAAATTCGAGGCAATGTACTTGTA TTGAGTCAGCACAAATTTGCAAGCAATGTTGTGGAGAAGTGTGTCACTCACGCCTCCCGT ACGGAGCGCGCTGTGCTTATCGATGAGGTGTGCACCATGAATGACGGTCCTCACAGTGCC TTATACACCATGATGAAGGACCAGTACGCCAACTACGTGGTCCAGAAGATGATCGATGTG GCAGAGCCAGCCCAGCGGAAGATCGTCATGCATAAGATCCGGCCCCACATTGCGACTCTT CGCAAGTACACTTACGGCAAGCACATTCTGGCCAAGCTGGAGAAGTACTACATGAAGAAC GGCGTCGACTTGGGGCCCATCTGTGGCCCCCCCAATGGTATTATCTGAGGCAGTGTCACC CCTGTCCCCTCGTTCCCACTGACCTCACTGGCCCACTGGTGAATCCAACCAGCAACCAGA GATGTTCTAATGTAGAATCTGAAATGGGTAAATGGTTGCTCCAGGATTATCCTCTCCTCC AAAAAAAGGAATCAAATCCACAAGTGGAAAGCCTTTGTAAATTTGTTTAATTTTATTACG CATAACATGTACTAATTATTTTTTTTAATTGACTAATTGCCCTGTTGTTTTACTGGTGTA TAGGATACTTGTACATAGGTAACCAATGTACATGGGAGGCCACATATTTTGTTCAATGTT GTATCTATATTCCACATGTGGAAACTTTCAGGGTGGTTGGTTTAACAAAAAAAAAGTTTA AAAAAAAGAAAAAAAAAAGGTTTTTAACTCATTTGCCTCGCCGGCAAGTTTTGCAAATAG CTCTTCCCCACCTCCTCATTTTAGTAAAAAACAAAAACAAACAAAAAAACCTGAGAAGTT TGAATTTTAGTTAAATGACCCCAAACTGGCATTTAACAATGTTTATAAAATATATATATA AATATATATATATATAAATATAAAATGAAAATCATTTCAGAGTTGCTAAAGCTTCAGTTT ATAACATTAAGTTTATGAAACTTCTAAAAATTGCCTTTTTTGGAGCCTATTATGCCGAAG AAGATAATGTAGCCTGTTTTGTGAGGAGGAGATGGGGGCGCCCTGAATGCCTTTCAAGGC CGGGCGGGTGTAATTGTTTACTGCCTACTGGATTTTTTTCTGTTAACATTGAAAGGCAAA AATCTGATTATTTAGCATGAGAAAAAAAAAAAATCCAATTCTGCTTTTGGTCTTGCTTCT ATAAATATATAGTGTATACTTGGTGTAGACTTTGCATATATACAAATTTGTAGTATTTTC TTGTTTTGATGTCTAATCTGTATCTATAATGTACCCTAGTAGTCGAACATACTTTTGATT GTACAATTGTACATTTGTATACCTGTACTGTAAATGTGGAGAAGTATGAATCAACATAAA CACGTTTTTTGGTAAGAAAAGAAAATTAGCCAGCCCTGTGCATTCAGTGTATATTCACAC CTTTTATGGTCGTAGCATATAGTGTTGTATATTGTAAATTGTAATTTCAACCAGAAGTAA ATTTTTTTTTTCTTTTGAAGGAATAAATGTTCTTTATACAGCCTAGTTAACTTTTAAAAA GAAAAAAATAGCTTGGTTTTATTTGTCACCTAGTCAGATAGTAGCAAGATCCTTTCTAAA TGTTATTCAAGATGATTCAGTTCACACTAGTGGGTTTTTTTTTTTTTTTTAATCCTAAAA AAAGTAATGTTTTGCTTATTTTGTGACAGTCAAGAGGACGTGCAAAGTTGAGCCCTGCCC TAACTTTCCTTACAATCAGAGCCCCTCTCACCTTGTAAAGTGTGAATTGCCCTTCCTTTT TGTACAGAAGATGAACTGTATTTTGCATTTTGTCTACTTGTAAGTGAATGTAACATACTG TCAATTTTCCTTGTTTGAATATAGAATTGTAACACTACACGGTGTACATTTCCAGAGCCT TGTGTATATTTCCAATGAACTTTTTTGCAAGCACACTTGTAACCATATGTGTATAATTAA CAAACCTGTGTATGCTTATGCCTGGGCAACTATTTTTTGTAACTCTTGTGTAGATTGTCT CTAAACAATGTGTGATCTTTATTTTGAAAAATACAGAACTTTGGAATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 383-502, - strand, RNAz p=0.633753 | |
| 459-576, - strand, RNAz p=0.525437 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 383-502, - strand, RNAz p=0.633753 | |
| 459-576, - strand, RNAz p=0.525437 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-137, gnl|bosTau2|chr11 (61310078-61309942) | |
| 1-137, gnl|canFam2|chr17 (18246864-18247016) | |
| 1-137, gnl|danRer3|chr23 (36900360-36900528) | |
| 1-137, gnl|dasNov1|scaffold_68405 (227-369) | |
| 1-137, gnl|echTel1|scaffold_255114 (3178-3026) | |
| 1-137, gnl|fr1|chrUn (80872596-80872754) | |
| 1-137, gnl|galGal2|chr3 (99821466-99821619) | |
| 1-137, gnl|hg17|chr2 (20377421-20377574) | |
| 1-137, gnl|Hg17|chr2 (20377556-20377420) | |
| 1-137, gnl|loxAfr1|scaffold_1458 (62130-62282) | |
| 1-137, gnl|mm7|chr12 (8773525-8773376) | |
| 1-137, gnl|Mm7|chr12 (8773388-8773524) | |
| 1-137, gnl|monDom2|scaffold_164 (722001-721848) | |
| 1-137, gnl|oryCun1|scaffold_98671 (8194-8347) | |
| 1-137, gnl|panTro1|chr12 (21203576-21203729) | |
| 1-137, gnl|rheMac2|chr13 (20157302-20157455) | |
| 1-137, gnl|rn3|chr6 (32231666-32231517) | |
| 1-137, gnl|tetNig1|chr14 (4064898-4064756) | |
| 1-137, gnl|xenTro1|scaffold_103 (1661518-1661668) | |
| 374-576, gnl|bosTau2|chr11 (61308161-61307959) | |
| 374-576, gnl|canFam2|chr17 (18244084-18244303) | |
| 374-576, gnl|danRer3|chr23 (36890304-36890520) | |
| 374-576, gnl|dasNov1|scaffold_27063 (43208-42990) | |
| 374-576, gnl|echTel1|scaffold_255114 (7906-7685) | |
| 374-576, gnl|fr1|chrUn (80870776-80870972) | |
| 374-576, gnl|galGal2|chr3 (99815874-99816082) | |
| 374-576, gnl|hg17|chr2 (20375188-20375406) | |
| 374-576, gnl|Hg17|chr2 (20375412-20375211) | |
| 374-576, gnl|loxAfr1|scaffold_1458 (60195-60413) | |
| 374-576, gnl|mm7|chr12 (8775189-8774988) | |
| 374-576, gnl|Mm7|chr12 (8774980-8775181) | |
| 374-576, gnl|monDom2|scaffold_164 (723555-723358) | |
| 374-576, gnl|oryCun1|scaffold_98671 (6077-6297) | |
| 374-576, gnl|panTro1|chr12 (21201340-21201558) | |
| 374-576, gnl|rheMac2|chr13 (20155067-20155286) | |
| 374-576, gnl|rn3|chr6 (32233374-32233173) | |
| 374-576, gnl|tetNig1|chr14 (4066803-4066597) | |
| 374-576, gnl|xenTro1|scaffold_103 (1660532-1660747) | |
| 2202-2432, gnl|bosTau2|chr16 (14425361-14425598) | |
| 2202-2432, gnl|Hg17|chr1 (219445579-219445095) | |
| 2202-2432, gnl|Mm7|chr4 (129995736-129995960) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-137, gnl|bosTau2|chr11 (61310078-61309942) | |
| 1-137, gnl|canFam2|chr17 (18246864-18247016) | |
| 1-137, gnl|danRer3|chr23 (36900360-36900528) | |
| 1-137, gnl|dasNov1|scaffold_68405 (227-369) | |
| 1-137, gnl|echTel1|scaffold_255114 (3178-3026) | |
| 1-137, gnl|fr1|chrUn (80872596-80872754) | |
| 1-137, gnl|galGal2|chr3 (99821466-99821619) | |
| 1-137, gnl|hg17|chr2 (20377421-20377574) | |
| 1-137, gnl|Hg17|chr2 (20377556-20377420) | |
| 1-137, gnl|loxAfr1|scaffold_1458 (62130-62282) | |
| 1-137, gnl|mm7|chr12 (8773525-8773376) | |
| 1-137, gnl|Mm7|chr12 (8773388-8773524) | |
| 1-137, gnl|monDom2|scaffold_164 (722001-721848) | |
| 1-137, gnl|oryCun1|scaffold_98671 (8194-8347) | |
| 1-137, gnl|panTro1|chr12 (21203576-21203729) | |
| 1-137, gnl|rheMac2|chr13 (20157302-20157455) | |
| 1-137, gnl|rn3|chr6 (32231666-32231517) | |
| 1-137, gnl|tetNig1|chr14 (4064898-4064756) | |
| 1-137, gnl|xenTro1|scaffold_103 (1661518-1661668) | |
| 374-576, gnl|bosTau2|chr11 (61308161-61307959) | |
| 374-576, gnl|canFam2|chr17 (18244084-18244303) | |
| 374-576, gnl|danRer3|chr23 (36890304-36890520) | |
| 374-576, gnl|dasNov1|scaffold_27063 (43208-42990) | |
| 374-576, gnl|echTel1|scaffold_255114 (7906-7685) | |
| 374-576, gnl|fr1|chrUn (80870776-80870972) | |
| 374-576, gnl|galGal2|chr3 (99815874-99816082) | |
| 374-576, gnl|hg17|chr2 (20375188-20375406) | |
| 374-576, gnl|Hg17|chr2 (20375412-20375211) | |
| 374-576, gnl|loxAfr1|scaffold_1458 (60195-60413) | |
| 374-576, gnl|mm7|chr12 (8775189-8774988) | |
| 374-576, gnl|Mm7|chr12 (8774980-8775181) | |
| 374-576, gnl|monDom2|scaffold_164 (723555-723358) | |
| 374-576, gnl|oryCun1|scaffold_98671 (6077-6297) | |
| 374-576, gnl|panTro1|chr12 (21201340-21201558) | |
| 374-576, gnl|rheMac2|chr13 (20155067-20155286) | |
| 374-576, gnl|rn3|chr6 (32233374-32233173) | |
| 374-576, gnl|tetNig1|chr14 (4066803-4066597) | |
| 374-576, gnl|xenTro1|scaffold_103 (1660532-1660747) | |
| 2202-2432, gnl|bosTau2|chr16 (14425361-14425598) | |
| 2202-2432, gnl|Hg17|chr1 (219445579-219445095) | |
| 2202-2432, gnl|Mm7|chr4 (129995736-129995960) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| spc (0.453463) | |
| aor (0.390549) | |
| fty (0.351679) | |
| vin (0.332557) | |
| hyp (0.285673) | |
| lnt (0.284616) | |
| ova (0.258264) | |
| bla (0.248694) | |
| tra (0.246184) | |
| clu (0.239292) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| col (0.195008) | |
| sag (0.182715) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cje (0.165235) | |
| cki (0.165235) | |
| mga (0.160205) | |
| cag (0.151194) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| spl (0.143184) | |
| pty (0.142714) | |
| nca (0.136874) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ret (0.128733) | |
| thg (0.126791) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (0.453463) | |
| aor (0.390549) | |
| fty (0.351679) | |
| vin (0.332557) | |
| hyp (0.285673) | |
| lnt (0.284616) | |
| ova (0.258264) | |
| bla (0.248694) | |
| tra (0.246184) | |
| clu (0.239292) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| col (0.195008) | |
| sag (0.182715) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cje (0.165235) | |
| cki (0.165235) | |
| mga (0.160205) | |
| cag (0.151194) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| spl (0.143184) | |
| pty (0.142714) | |
| nca (0.136874) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| kid (0.129735) | |
| ret (0.128733) | |
| thg (0.126791) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| jej (0.0989218) | |
| ldo (0.0970026) |