Non-Coding RNA Search

Ss1.1-rspc032_f20.5

Sequence:


               
               GAAGTCAGGCGAGCCCAAGAATGGCGGGCACCGGTTTGGTGGCTGGAGAGGTTGTTGTAG
ACGCGCTGCCGTATTTTGACCAGGGTTATGAAGCGCCTGGTGTGCGGGAAGCGGCCGCGG
CGTTGGTAGAGGAGGAAACTCGCAGGTACCGACCTACCAAGAACTACTTGAGCTACCTGA
CAGCCCCAGATTATTCCGCTTTTGAAACTGACATAATGAGAAATGAATTTGAAAGACTGG
CTGCTCGACAACCAATTGAATTGCTCAGTATGAAACGATATGAACTTCCGGCCCCTTCCT
CAGGTCAGAAAAATGACATTACTGCATGGCAAGAATGTGTAAACAATTCTATGGCTCAGT
TGGAGCATCAGGCAGTTCGAATTGAGAATCTGGAACTAATGTCACAGCATGGATGCAATG
CCTGGAAAGTATATAATGAAAATCTAGTTCATATGATTGAACATGCCCAGAAAGAACTCC
AGAAATTAAGGAAACATATTCAAGATTTAAATTGGCAACGAAAGAACATGCAGCTCACAG
CTGGATCTAAATTAAGAGAAATGGAGTCAACTTGGGTATCCCTGGTCAGTAAGAATTACG
AGATTGAAAGGACTATTGTACAATTAGAAAATGAACTCTTTCAAATGAAGCAGCAACATG
GAGAGGCAAACAAAGAAAACATACGGCAAGACTTCTGAAAAAGATTAATTTGGCGGGTAG
GAAGGAAGGCTTTCACAGAAGATCAGGCATCTGAGCTATGAGGAACAATAACATCCTATG
AAAATCATCCAGGTTAAATGTGGAAACCGTAGAATGTGGACTGTTATATGTCATTTGTAC
ATTTAAGCAAAATAAAAAATTTCAAAATGAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGTCAGGCGAGCCCAAGAATGGCGGGCACCGGTTTGGTGGCTGGAGAGGTTGTTGTAG
ACGCGCTGCCGTATTTTGACCAGGGTTATGAAGCGCCTGGTGTGCGGGAAGCGGCCGCGG
CGTTGGTAGAGGAGGAAACTCGCAGGTACCGACCTACCAAGAACTACTTGAGCTACCTGA
CAGCCCCAGATTATTCCGCTTTTGAAACTGACATAATGAGAAATGAATTTGAAAGACTGG
CTGCTCGACAACCAATTGAATTGCTCAGTATGAAACGATATGAACTTCCGGCCCCTTCCT
CAGGTCAGAAAAATGACATTACTGCATGGCAAGAATGTGTAAACAATTCTATGGCTCAGT
TGGAGCATCAGGCAGTTCGAATTGAGAATCTGGAACTAATGTCACAGCATGGATGCAATG
CCTGGAAAGTATATAATGAAAATCTAGTTCATATGATTGAACATGCCCAGAAAGAACTCC
AGAAATTAAGGAAACATATTCAAGATTTAAATTGGCAACGAAAGAACATGCAGCTCACAG
CTGGATCTAAATTAAGAGAAATGGAGTCAACTTGGGTATCCCTGGTCAGTAAGAATTACG
AGATTGAAAGGACTATTGTACAATTAGAAAATGAACTCTTTCAAATGAAGCAGCAACATG
GAGAGGCAAACAAAGAAAACATACGGCAAGACTTCTGAAAAAGATTAATTTGGCGGGTAG
GAAGGAAGGCTTTCACAGAAGATCAGGCATCTGAGCTATGAGGAACAATAACATCCTATG
AAAATCATCCAGGTTAAATGTGGAAACCGTAGAATGTGGACTGTTATATGTCATTTGTAC
ATTTAAGCAAAATAAAAAATTTCAAAATGAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5E9D4_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5E9D4_BOVIN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               277-439, gnl|bosTau2|chr3 (26552113-26552275)
               

               
               277-439, gnl|Hg17|chr1 (114830415-114830253)
               

               
               277-439, gnl|Mm7|chr3 (102968447-102968609)
               


               
               573-870, gnl|bosTau2|chr3 (26560167-26560469)
               

               
               573-870, gnl|Hg17|chr1 (114822918-114822616)
               

               
               573-870, gnl|Mm7|chr3 (102972464-102972734)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               277-439, gnl|bosTau2|chr3 (26552113-26552275)
               

               
               277-439, gnl|Hg17|chr1 (114830415-114830253)
               

               
               277-439, gnl|Mm7|chr3 (102968447-102968609)
               


               
               573-870, gnl|bosTau2|chr3 (26560167-26560469)
               

               
               573-870, gnl|Hg17|chr1 (114822918-114822616)
               

               
               573-870, gnl|Mm7|chr3 (102972464-102972734)

Expressed library(ies): 55 entry(ies)

More info

Expressed library(ies): 55 entry(ies)

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               tes (1.4547)
               

               
               isp (1.35338)
               

               
               cbe (1.19617)
               

               
               tbr (1.07925)
               

               
               lin (1.01922)
               

               
               cte (0.87822)
               

               
               aor (0.781097)
               

               
               sug (0.763747)
               

               
               spc (0.680195)
               

               
               ova (0.645661)
               

               
               thg (0.633955)
               

               
               fco (0.628832)
               

               
               bfe (0.599431)
               

               
               cmu (0.55918)
               

               
               lyg (0.532411)
               

               
               sin (0.524843)
               

               
               kid (0.518941)
               

               
               fhi (0.508733)
               

               
               ski (0.440205)
               

               
               liv (0.438853)
               

               
               spl (0.429553)
               

               
               hea (0.408998)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               cut (0.339847)
               

               
               sme (0.305437)
               

               
               ldo (0.291008)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               ctl (0.153069)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 55 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.4547)
               

               
               isp (1.35338)
               

               
               cbe (1.19617)
               

               
               tbr (1.07925)
               

               
               lin (1.01922)
               

               
               cte (0.87822)
               

               
               aor (0.781097)
               

               
               sug (0.763747)
               

               
               spc (0.680195)
               

               
               ova (0.645661)
               

               
               thg (0.633955)
               

               
               fco (0.628832)
               

               
               bfe (0.599431)
               

               
               cmu (0.55918)
               

               
               lyg (0.532411)
               

               
               sin (0.524843)
               

               
               kid (0.518941)
               

               
               fhi (0.508733)
               

               
               ski (0.440205)
               

               
               liv (0.438853)
               

               
               spl (0.429553)
               

               
               hea (0.408998)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               cut (0.339847)
               

               
               sme (0.305437)
               

               
               ldo (0.291008)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               ctl (0.153069)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	277-439, gnl\|bosTau2\|chr3 (26552113-26552275)
	277-439, gnl\|Hg17\|chr1 (114830415-114830253)
	277-439, gnl\|Mm7\|chr3 (102968447-102968609)

	573-870, gnl\|bosTau2\|chr3 (26560167-26560469)
	573-870, gnl\|Hg17\|chr1 (114822918-114822616)
	573-870, gnl\|Mm7\|chr3 (102972464-102972734)

	tes (1.4547)
	isp (1.35338)
	cbe (1.19617)
	tbr (1.07925)
	lin (1.01922)
	cte (0.87822)
	aor (0.781097)
	sug (0.763747)
	spc (0.680195)
	ova (0.645661)
	thg (0.633955)
	fco (0.628832)
	bfe (0.599431)
	cmu (0.55918)
	lyg (0.532411)
	sin (0.524843)
	kid (0.518941)
	fhi (0.508733)
	ski (0.440205)
	liv (0.438853)
	spl (0.429553)
	hea (0.408998)
	ret (0.3862)
	tra (0.369276)
	cut (0.339847)
	sme (0.305437)
	ldo (0.291008)
	ssp (0.271039)
	ste (0.270416)
	mgp (0.230681)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	rec (0.17307)
	mcp (0.170648)
	cki (0.165235)
	cje (0.165235)
	nco (0.161734)
	mga (0.160205)
	ctl (0.153069)
	eli (0.151814)
	fat (0.147427)
	pty (0.142714)
	lnt (0.142308)
	csk (0.140746)
	hlv (0.139256)
	nca (0.136874)
	che (0.136314)
	pla (0.133672)
	nmm (0.132802)
	bla (0.124347)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)
	eje (0.0988338)