Non-Coding RNA Search

Ss1.1-rspc032_h14.5

Sequence:


               
               CATTATTTTATAGAAAAATGAGCAGAGTGGACATGCCAAGCCATTAATCGCGTCGGTACC
AGCAATGCCAGACATGTTTAAGGTGGCCATAGGCAAGGGTGGTGCAATGAGGAATGTGAA
CATCTGGCCTGCTCTCAAGACCCAGAACCTTTATTGTGTTGTTCAAGCCTGTTGTTTGTT
TTTGTTTTTTATTAAAAAATTAAGATGTGTAACTTTTTTTTGTTAGATATTCTTTTAATA
CCTGCCAGTGCTTTGGAACTGTAAAGATGTCACAATTGAAATACATTTGCTTTATGTTTT
GTTTTTTTAACACTCCGTATTAAGTCAAGCAAAGTTGAACAACCAGCAAGCATTTAGAAC
CTCCTTTTCAGTGTCTTCTAAGGAACTGAATGCCCCCATCACAGCAACAAAAGTATTTTA
TAACTATCACTTGCTAGACTTGAAGCGCCTGCTTAAATGACTTGGGATAGGTCCCAAATA
ATGGGTATATATAGTCAACAAATAAAGCAAAATACAACATGCATTCCAGATTTCATCTTT
TTCTGTTAAGGAGTTAACAGCTAAACTATGAGAAGATTAGGTGATCCTGGAATATGTTAA
GTTTAAATTAATGTAAAACACACCACCAACAAAAAACCTATTTCTATTTAAGTGATGTTT
TTTTTTTATCATTATAGCTAGCATTCAGTTATCCTTCAAATGCACACTTACACTGTTATC
TGATTGTTTATAATAAAGAATACCATACCTGTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTATTTTATAGAAAAATGAGCAGAGTGGACATGCCAAGCCATTAATCGCGTCGGTACC
AGCAATGCCAGACATGTTTAAGGTGGCCATAGGCAAGGGTGGTGCAATGAGGAATGTGAA
CATCTGGCCTGCTCTCAAGACCCAGAACCTTTATTGTGTTGTTCAAGCCTGTTGTTTGTT
TTTGTTTTTTATTAAAAAATTAAGATGTGTAACTTTTTTTTGTTAGATATTCTTTTAATA
CCTGCCAGTGCTTTGGAACTGTAAAGATGTCACAATTGAAATACATTTGCTTTATGTTTT
GTTTTTTTAACACTCCGTATTAAGTCAAGCAAAGTTGAACAACCAGCAAGCATTTAGAAC
CTCCTTTTCAGTGTCTTCTAAGGAACTGAATGCCCCCATCACAGCAACAAAAGTATTTTA
TAACTATCACTTGCTAGACTTGAAGCGCCTGCTTAAATGACTTGGGATAGGTCCCAAATA
ATGGGTATATATAGTCAACAAATAAAGCAAAATACAACATGCATTCCAGATTTCATCTTT
TTCTGTTAAGGAGTTAACAGCTAAACTATGAGAAGATTAGGTGATCCTGGAATATGTTAA
GTTTAAATTAATGTAAAACACACCACCAACAAAAAACCTATTTCTATTTAAGTGATGTTT
TTTTTTTATCATTATAGCTAGCATTCAGTTATCCTTCAAATGCACACTTACACTGTTATC
TGATTGTTTATAATAAAGAATACCATACCTGTAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-750, gnl|bosTau2|chr11 (79684247-79684965)
               

               
               1-750, gnl|Hg17|chr13 (36317758-36316971)
               

               
               1-750, gnl|Mm7|chr3 (54929140-54929969)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-750, gnl|bosTau2|chr11 (79684247-79684965)
               

               
               1-750, gnl|Hg17|chr13 (36317758-36316971)
               

               
               1-750, gnl|Mm7|chr3 (54929140-54929969)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               spc (0.453463)
               

               
               gul (0.355177)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.453463)
               

               
               gul (0.355177)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)

	1-750, gnl\|bosTau2\|chr11 (79684247-79684965)
	1-750, gnl\|Hg17\|chr13 (36317758-36316971)
	1-750, gnl\|Mm7\|chr3 (54929140-54929969)

	spc (0.453463)
	gul (0.355177)
	sin (0.174948)
	nco (0.161734)
	ski (0.146735)
	lin (0.145603)
	ova (0.129132)
	pgl (0.118483)