Non-Coding RNA Search

Ss1.1-rspc032_n19.5

Sequence:


               
               CTGGACACAGTGTAAATACATCTGATATGTATCCAATCCCCAATACCTTAGAATACGGAA
ACAGAACTTACAAAATAATTAATGGGAATATGACTTGGTATACAGCACTAAAAGTCTGCC
TGATGCATGGAGCAGATCTGGTCAGCATTACAGACCAGTACCACCAGTCCTTCCTCACTG
TTATGCTCCATCGGCTAGGACACGCCCACTGGATTGGACTGTTCACTGAAAATGGTCTTC
ACTTTGAATGGTCAGATGGCACCAAATCTTCCTTCAGTTTTTGGAAAGATGATGAGTCAT
CCTTCCTGGGTGACTGTGTTTTCGCAGACACCAGTGGGCGCTGGAGTAGCACAGCCTGCG
AGTCATATCTGCAAGGAGCCATCTGTCAAGTGCTCACGGAAACAAGACCCAGATACCCAG
AGTTGTGCTCAGAAACATCTATTCCCTGGATAAAATTCAGAAGTAATTGCTACAGTTTTT
CTACAGTCCTAGACAGTACGAGTTTTGAGGCTGCTCATGAATTTTGCAAAAAGGAAGGAT
CTAATCTTTTAACAATAAAAGATGAAGCTGAAAATTCATTTCTCCTAGAAGAGCTTTCTG
CCTTCACTTCTTCTGTCCAGATGGTTTGGCTCAATGCTCAGTTTGATGGTGACACTACAA
CCATAAAGTGGTTTGATGGAACTCCCACAGACCAGTCAAACTGGGGTATTCGGAAGCCAG
AGATGGGCCATGTCAAACCCCATCTGTGTGTTGCCCTGAGGATTCCCGAAGGAGTGTGGC
AGTTATCCTCATGTCAAGACAAAAAGGGATTTATATGTAAAATGGAAGCAGATATTCACA
CACTAGAGGAGCATCTAGGAAAAGGACCAAGTCACAGCATTATACCTCTTGCGGTAGCAC
TGACACTGATGGTAATTCTGGCAATTTCCACACTTTCCTTCTGCATATACAAGCACAATA
GCATTATCTTCAGGAGACTTTCAGAGTTTAGAAATTCTTATTATTCTACAACTAACTTTA
GTACAGTAAATTTAGAAGAAAATATTCTCATTTCTGATCTTGAGAAGAATGACCAGTAAT
AATGAAGTGAGAGGAATGCCCCAACCATGAGAATGAGTAAAGAAGAGTACGTTCCTTCAA
GGACCAGATGCCACTGTAATGTAAATTGTGTTACCATTCTAATTATTCTCAAAGTGATTA
TTGGGTTTGAATTGTAACCAAATCAGGTGGGTGTTGATTTATTTATTTCCTCAAACTGTG
ATGATTCTTAAAAAGGAGAAATTTTACAATGGTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGACACAGTGTAAATACATCTGATATGTATCCAATCCCCAATACCTTAGAATACGGAA
ACAGAACTTACAAAATAATTAATGGGAATATGACTTGGTATACAGCACTAAAAGTCTGCC
TGATGCATGGAGCAGATCTGGTCAGCATTACAGACCAGTACCACCAGTCCTTCCTCACTG
TTATGCTCCATCGGCTAGGACACGCCCACTGGATTGGACTGTTCACTGAAAATGGTCTTC
ACTTTGAATGGTCAGATGGCACCAAATCTTCCTTCAGTTTTTGGAAAGATGATGAGTCAT
CCTTCCTGGGTGACTGTGTTTTCGCAGACACCAGTGGGCGCTGGAGTAGCACAGCCTGCG
AGTCATATCTGCAAGGAGCCATCTGTCAAGTGCTCACGGAAACAAGACCCAGATACCCAG
AGTTGTGCTCAGAAACATCTATTCCCTGGATAAAATTCAGAAGTAATTGCTACAGTTTTT
CTACAGTCCTAGACAGTACGAGTTTTGAGGCTGCTCATGAATTTTGCAAAAAGGAAGGAT
CTAATCTTTTAACAATAAAAGATGAAGCTGAAAATTCATTTCTCCTAGAAGAGCTTTCTG
CCTTCACTTCTTCTGTCCAGATGGTTTGGCTCAATGCTCAGTTTGATGGTGACACTACAA
CCATAAAGTGGTTTGATGGAACTCCCACAGACCAGTCAAACTGGGGTATTCGGAAGCCAG
AGATGGGCCATGTCAAACCCCATCTGTGTGTTGCCCTGAGGATTCCCGAAGGAGTGTGGC
AGTTATCCTCATGTCAAGACAAAAAGGGATTTATATGTAAAATGGAAGCAGATATTCACA
CACTAGAGGAGCATCTAGGAAAAGGACCAAGTCACAGCATTATACCTCTTGCGGTAGCAC
TGACACTGATGGTAATTCTGGCAATTTCCACACTTTCCTTCTGCATATACAAGCACAATA
GCATTATCTTCAGGAGACTTTCAGAGTTTAGAAATTCTTATTATTCTACAACTAACTTTA
GTACAGTAAATTTAGAAGAAAATATTCTCATTTCTGATCTTGAGAAGAATGACCAGTAAT
AATGAAGTGAGAGGAATGCCCCAACCATGAGAATGAGTAAAGAAGAGTACGTTCCTTCAA
GGACCAGATGCCACTGTAATGTAAATTGTGTTACCATTCTAATTATTCTCAAAGTGATTA
TTGGGTTTGAATTGTAACCAAATCAGGTGGGTGTTGATTTATTTATTTCCTCAAACTGTG
ATGATTCTTAAAAAGGAGAAATTTTACAATGGTTAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q53R45_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53R45_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-234, gnl|bosTau2|chr2 (25998696-25998463)
               

               
               1-234, gnl|Hg17|chr2 (160633590-160633357)
               

               
               1-234, gnl|Mm7|chr2 (60359287-60359054)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-234, gnl|bosTau2|chr2 (25998696-25998463)
               

               
               1-234, gnl|Hg17|chr2 (160633590-160633357)
               

               
               1-234, gnl|Mm7|chr2 (60359287-60359054)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               spc (0.680195)
               

               
               bla (0.248694)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.680195)
               

               
               bla (0.248694)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

	1-234, gnl\|bosTau2\|chr2 (25998696-25998463)
	1-234, gnl\|Hg17\|chr2 (160633590-160633357)
	1-234, gnl\|Mm7\|chr2 (60359287-60359054)

	spc (0.680195)
	bla (0.248694)
	fco (0.157208)
	lun (0.150489)
	lin (0.145603)
	lnt (0.142308)
	pla (0.133672)
	kid (0.129735)
	tra (0.123092)