Non-Coding RNA Search

Ss1.1-rspc032_o5.5

Sequence:


               
               GGCCCGGGGGGCGGTGGCCCGGGGGCTGGCGGGGGCGGGGGGCCGGGCGGCGGGGCGGGC
TCCCTCTACAGCGACGTCAGCACCGGCCTGACGTGGCGATCTGGCACGGCTAGCTCCGTG
TCTTATCCAAAGCAGATGCCATTGTCCCAGGTCTGAGCAGAGGGGAGGGGGCGCCCGGGA
GGGATGGGGCGAGGACACTCGACGGCAGAGGTTCCCACCCTATCACCGTGTTGATTGCTA
TTAGCATGATAATGAACTCTTAATGGTATCCATTAGCTGGGACTTAGAGGACTCTCTTAG
AACAAAGTACCTGGCATTGAAGGCTCCCAGACCCAGCCCCCTTTCCTCCACCGACGGGCG
AGGAGTTCCTCCCGCCAGCCGTTAATTTCTGTTGGCACAGGAGGGTGAACTCCGCTGCTG
CGTTTCCAGGACCCAAAGTTTGGAGCCCTCGCTGGTTGCCATTTGCTGAGCTTGAAGCCA
GACCTACAGATTTCACCTGAGGGGACCTAGTTTTCTCCCTCGTCTCTGCTACGTAAACTC
CTACTTCTAACACGCCCTAGAGGAGGGATGACCACCGCCTAACGGGATTGCACGGTTTGG
GTATTCTTAATGACCAGGCAGATGCCTTAAGTAAACAAACAAGAAATGTCTTAATTATAC
ACCCCAAGTAAATACGGGTTTCTTACCTTAGAGGATGTATTTATATAATTATTTGTTAAA
TTGTAAAAAACGTGTAAAATATGTACATATCCAAAGATATACAGTCTGTACATTTTTTGT
AAAAAGTTTAGAGGCCACCCCTGTAAGAACAAATATAAGTATTCTATTTTGTCAATAAAA
TGACTTTTGATAAATGATTTAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCGGGGGGCGGTGGCCCGGGGGCTGGCGGGGGCGGGGGGCCGGGCGGCGGGGCGGGC
TCCCTCTACAGCGACGTCAGCACCGGCCTGACGTGGCGATCTGGCACGGCTAGCTCCGTG
TCTTATCCAAAGCAGATGCCATTGTCCCAGGTCTGAGCAGAGGGGAGGGGGCGCCCGGGA
GGGATGGGGCGAGGACACTCGACGGCAGAGGTTCCCACCCTATCACCGTGTTGATTGCTA
TTAGCATGATAATGAACTCTTAATGGTATCCATTAGCTGGGACTTAGAGGACTCTCTTAG
AACAAAGTACCTGGCATTGAAGGCTCCCAGACCCAGCCCCCTTTCCTCCACCGACGGGCG
AGGAGTTCCTCCCGCCAGCCGTTAATTTCTGTTGGCACAGGAGGGTGAACTCCGCTGCTG
CGTTTCCAGGACCCAAAGTTTGGAGCCCTCGCTGGTTGCCATTTGCTGAGCTTGAAGCCA
GACCTACAGATTTCACCTGAGGGGACCTAGTTTTCTCCCTCGTCTCTGCTACGTAAACTC
CTACTTCTAACACGCCCTAGAGGAGGGATGACCACCGCCTAACGGGATTGCACGGTTTGG
GTATTCTTAATGACCAGGCAGATGCCTTAAGTAAACAAACAAGAAATGTCTTAATTATAC
ACCCCAAGTAAATACGGGTTTCTTACCTTAGAGGATGTATTTATATAATTATTTGTTAAA
TTGTAAAAAACGTGTAAAATATGTACATATCCAAAGATATACAGTCTGTACATTTTTTGT
AAAAAGTTTAGAGGCCACCCCTGTAAGAACAAATATAAGTATTCTATTTTGTCAATAAAA
TGACTTTTGATAAATGATTTAAAC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-175, gnl|bosTau2|chr13 (15026123-15025946)
               

               
               1-175, gnl|Hg17|chr10 (35968456-35968260)
               

               
               1-175, gnl|Mm7|chr18 (9418576-9418783)
               


               
               181-862, gnl|bosTau2|chr13 (15025891-15025207)
               

               
               181-862, gnl|Hg17|chr10 (35968253-35967543)
               

               
               181-862, gnl|Mm7|chr18 (9418787-9419429)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-175, gnl|bosTau2|chr13 (15026123-15025946)
               

               
               1-175, gnl|Hg17|chr10 (35968456-35968260)
               

               
               1-175, gnl|Mm7|chr18 (9418576-9418783)
               


               
               181-862, gnl|bosTau2|chr13 (15025891-15025207)
               

               
               181-862, gnl|Hg17|chr10 (35968253-35967543)
               

               
               181-862, gnl|Mm7|chr18 (9418787-9419429)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               cmu (0.372787)
               

               
               eye (0.341006)
               

               
               sto (0.179824)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               eye (0.341006)
               

               
               sto (0.179824)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1-175, gnl\|bosTau2\|chr13 (15026123-15025946)
	1-175, gnl\|Hg17\|chr10 (35968456-35968260)
	1-175, gnl\|Mm7\|chr18 (9418576-9418783)

	181-862, gnl\|bosTau2\|chr13 (15025891-15025207)
	181-862, gnl\|Hg17\|chr10 (35968253-35967543)
	181-862, gnl\|Mm7\|chr18 (9418787-9419429)

	cmu (0.372787)
	eye (0.341006)
	sto (0.179824)
	cki (0.165235)
	csp (0.161186)
	cli (0.152812)
	lun (0.150489)
	cst (0.140036)
	lyg (0.133103)
	sug (0.127291)
	thg (0.126791)
	pgl (0.118483)
	ecc (0.115035)
	spc (0.113366)
	eje (0.0988338)