Non-Coding RNA Search

Ss1.1-rspc033_a5.5

Sequence:


               
               GCAGCAGAGACTACAGGGAGAGGGAGCGGGATTATGAGCGTGACCAGGAGCGCATACTGC
GGGAGAGAGAGAGGCTGAAGCGGCAGGAAGAGGAGCGCCGCAGGCAGAAGGAGCGCTATG
AGAAAGAGAAGGCTTTTAAAAGGAAAGAAGAAGAAATGAAAAAAGAGAAAGAAGCACTTC
GGGATAAAGCCAAGAAGACTGAAAGTACAGAACCAGTAGGCAGCTCAGAAAAAACTGAAA
AGAAAGAAGAAGTGGTTAAGAGAGATCGCATAAGAAACAAGGATCGCCCAGCAATGCAGC
TTTACCAACCAGGAGCTCGAAGCCGAAATCGACTCTGTCCCCCTGATGACAGCACCAAGT
CTGGAGATTCAACCATAGACAAAAAGCAGGAAAGTGGTATTAGCCATAGAAAAGAAGGAG
GCGAGGAGTGATAAGTCCCAATGGCCTTCGGTGTCCTGACTGTCTAGGCAGCCAAAGAGC
ACGTATTAAGCAATCCAGAAGTGCCTTCAGGGCAAAGGAATAGAGAGAGAAAGGGGGTCG
CTGTGCTGGTGGGGTCCACTGCAGAGGAGTATGTTTTGCGTCAAAGCAGGAACCTGATTG
CAGGTTCAGATTGGAAGTACAATTTCATTTTTTATGCAGTTCCTACAAATTAATTTTAAA
GTGTCAGACAAAGCTGAGGGAGAGGACATGCATTGCAATTTGCAGGCAGGAAATGTCAAG
AGAGGACTTAATTAGGTATGACATGAGAAGAAGATATGAGAACTGTCTCTAAAATCAAAA
GGCTTTGTTCATCCTGGATTGAATTTTCTTAATTTCCGTGGAGCAGAGTCACTTTGAGGT
CTTGTTCAGGTCTAGTTATAGTCATTGTTGGTGATAACTGTTGACTTTGTGTAGTGTAGA
AGCAACAAGCATGTGATTGTAATACAGTGAAGGATATAACAAATTTTCGCTTATGCAAAA
ATTTAGTCATGTCTATATCCTATATCCTAAAGTTTCAGGATTCGTTTTATTTTTTTTGTT
TGTTTGCTTACATGAGCTTAGCATAAAAAATTTTTTTAAGACATCTTCTGCCTTTAGCAA
TTTTTACATTAGTAGGTAAAGTTTAACCCTTATTTGTTGCCTGACAATCCAGTCTTTGTT
TTATCTTAGGTCTCATGAGCTGAGTGCATACCCTCTCCAGGAAGGAAACTGCACAAATAT
TTGTTCCTGTTAAAATAGCAACTTTTAGTCATAGCTTGTTTTGCATTGATGTCAATAAAT
ATCAACATCACTCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCAGAGACTACAGGGAGAGGGAGCGGGATTATGAGCGTGACCAGGAGCGCATACTGC
GGGAGAGAGAGAGGCTGAAGCGGCAGGAAGAGGAGCGCCGCAGGCAGAAGGAGCGCTATG
AGAAAGAGAAGGCTTTTAAAAGGAAAGAAGAAGAAATGAAAAAAGAGAAAGAAGCACTTC
GGGATAAAGCCAAGAAGACTGAAAGTACAGAACCAGTAGGCAGCTCAGAAAAAACTGAAA
AGAAAGAAGAAGTGGTTAAGAGAGATCGCATAAGAAACAAGGATCGCCCAGCAATGCAGC
TTTACCAACCAGGAGCTCGAAGCCGAAATCGACTCTGTCCCCCTGATGACAGCACCAAGT
CTGGAGATTCAACCATAGACAAAAAGCAGGAAAGTGGTATTAGCCATAGAAAAGAAGGAG
GCGAGGAGTGATAAGTCCCAATGGCCTTCGGTGTCCTGACTGTCTAGGCAGCCAAAGAGC
ACGTATTAAGCAATCCAGAAGTGCCTTCAGGGCAAAGGAATAGAGAGAGAAAGGGGGTCG
CTGTGCTGGTGGGGTCCACTGCAGAGGAGTATGTTTTGCGTCAAAGCAGGAACCTGATTG
CAGGTTCAGATTGGAAGTACAATTTCATTTTTTATGCAGTTCCTACAAATTAATTTTAAA
GTGTCAGACAAAGCTGAGGGAGAGGACATGCATTGCAATTTGCAGGCAGGAAATGTCAAG
AGAGGACTTAATTAGGTATGACATGAGAAGAAGATATGAGAACTGTCTCTAAAATCAAAA
GGCTTTGTTCATCCTGGATTGAATTTTCTTAATTTCCGTGGAGCAGAGTCACTTTGAGGT
CTTGTTCAGGTCTAGTTATAGTCATTGTTGGTGATAACTGTTGACTTTGTGTAGTGTAGA
AGCAACAAGCATGTGATTGTAATACAGTGAAGGATATAACAAATTTTCGCTTATGCAAAA
ATTTAGTCATGTCTATATCCTATATCCTAAAGTTTCAGGATTCGTTTTATTTTTTTTGTT
TGTTTGCTTACATGAGCTTAGCATAAAAAATTTTTTTAAGACATCTTCTGCCTTTAGCAA
TTTTTACATTAGTAGGTAAAGTTTAACCCTTATTTGTTGCCTGACAATCCAGTCTTTGTT
TTATCTTAGGTCTCATGAGCTGAGTGCATACCCTCTCCAGGAAGGAAACTGCACAAATAT
TTGTTCCTGTTAAAATAGCAACTTTTAGTCATAGCTTGTTTTGCATTGATGTCAATAAAT
ATCAACATCACTCAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6Q7J8_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6Q7J8_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               911-1014, - strand, RNAz p=0.999868

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               911-1014, - strand, RNAz p=0.999868

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1014, gnl|bosTau2|chr12 (36232509-36231495)
               

               
               4-1014, gnl|Hg17|chrX (118753879-118750135)
               

               
               4-1014, gnl|Mm7|chrX (31855568-31851722)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1014, gnl|bosTau2|chr12 (36232509-36231495)
               

               
               4-1014, gnl|Hg17|chrX (118753879-118750135)
               

               
               4-1014, gnl|Mm7|chrX (31855568-31851722)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               tra (0.246184)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	4-1014, gnl\|bosTau2\|chr12 (36232509-36231495)
	4-1014, gnl\|Hg17\|chrX (118753879-118750135)
	4-1014, gnl\|Mm7\|chrX (31855568-31851722)

	tra (0.246184)
	hea (0.204499)
	fcc (0.197785)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	eye (0.170503)
	pla (0.133672)
	lyg (0.133103)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	pgl (0.118483)
	spc (0.113366)