Non-Coding RNA Search

Ss1.1-rspc033_b20.5.5

Sequence:


               
               CTGCCGACCTGGGAGCCTTCTCCGCACAGCAGTTGGATCTGCATCTTCCCGGAATCGCCA
AGCCCCAGAAGCCGGGTTTCTTTCAATTAGGGTTGCTGTTTTCTGTTTCTCCCTGAGCCG
CATAAAGCTAGAAGATTTTTATCTAGCTCAAACAAGGCCTCTAGAATTCCCTCTTTTTTA
ATTTTTTTCCTGCGAGGGTGTTTTTTGGCTGCAATTGCATGAAATCCCAATGGTGTAGAC
CAGTGGCGATGGATCTAGGAGTTTACCAACTGAGACATTTTTCAATTTCTTTCTTGTCAT
CCTTGCTCGGGACTGAAAACGCCTCTGTGAGACTTGACAATAGCTCTTCTGGTGCAAGTG
TGGTAGCTATTGACAACAAAATCGAGCAAGCTATGGATCTGGTGAAAAGCCATTTGATGT
ATGCAGTTAGAGAGGAAGTGGAGGTCCTCAAAGAGCAAATCAAAGAACTAATAGAGAAAA
ATTCCCAGCTGGAGCAGGAAAACAATCTGCTGAAGACACTGGCCAGTCCGGAGCAGCTTG
CCCAGTTCCAGGCCCAGCTGCAGACTGGCTCCCCGCCGGCCACCACACAGCCCCAGGGGA
CCACACAGCCCCCGGCCCAGCCAGCGTCCCAGGGCTCAGGACCGACCGCGTAGCCTCCTA
GGCCCCCCCGCAGAACTGGCTGCTGCTGTCTGAACCGACTGACCGACCGACCGACCGGAG
AGGATGTGCTGGGGGAGGGGGGGGTCCGCCTCCACCACGGTCACCCATTTCAATGCTCAG
CTGCGAAAGAGACGTGAGACTGACATATGCCATTATCTCTTTTTTCCAGTATTAAACCCT
CATGTGCTTTTGGCTTGAAGAAGTTTCTTAGTTGGGCGACTTAAAGGTTAACCAGAGAAT
TAGCATGGATGTACTGGGACCTCATGCAGCGGGGCAGATCCGTGAGAAATGGTTTCATTC
ATGCTGAGGAGCTGTGTGCCTTTCCGCCCCTCCCCTGCTCCGCACCCCCACCTCCACCCC
CACCCCTACCCCTACCCCCACCTCCGAGAGGTCGTCGTGCTTGCTCCTGGCGTGCTGCAC
GCAGTCCCCAAGCCGTGGAGCGCCACTGGACTCTCCTCTCGCTCCTCCCCCACGAGGAAC
CGGAAAGGGGGGTGAAAGTCAAGACCGAAGCTTCATCTCACCTCGGAGGAGGGGAAACGT
AGGTCATTGTACACGTTGACGACTGTCACCAAAATCCATAAAAAAACGAAACAAAAACCC
AAGAGTACTGTGCCTCTTCCCAAAGCAAGGGATGACGCGGGACTATTCCAGAGTGACTGA
AGGGTGACAGGTAGCTGGCACCTCGGCTATCAACGTGAAGGTGGTTTTGCTCATTGTATA
TTTGTGTATGTAGTGTAACTATTTTGTACAATAGAGGACTGTAACTACTATTTAGCTTGT
ACAGACTGAGATTTAGATGTTTCATTGGCCGTCTGAAGAGGTGTGGCTTGTCTTTTATAT
AGAGATCTACATTACAAAATACTCCGTGAAGAAAAACACACCAAACGAAAGAGATTTTAA
GAATTTGGCACAGTTAGTCCCTTTGTGTAATCTGAACTCTTCTAGCTGCTGAATATCTTG
AAGTCAGTTCCTGTTCACTGAAGTCTTTCTGATTGAGCTGGTTGAATACTTTGAAAAATG
ATGCGTTCTAGCTGTTGAAATGGATTTCCCAATAGGGGTTCCTGCATATTACCTGTATAG
TAGCTCTATGCATATGTTTCTGTGCATGCTCTCTACCCAGTTGTAAGGTGTCACTGTATT
TAACTGTTGCACTTGTCAACTTTCAATAAAGCATATAAAATGTTGATAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCGACCTGGGAGCCTTCTCCGCACAGCAGTTGGATCTGCATCTTCCCGGAATCGCCA
AGCCCCAGAAGCCGGGTTTCTTTCAATTAGGGTTGCTGTTTTCTGTTTCTCCCTGAGCCG
CATAAAGCTAGAAGATTTTTATCTAGCTCAAACAAGGCCTCTAGAATTCCCTCTTTTTTA
ATTTTTTTCCTGCGAGGGTGTTTTTTGGCTGCAATTGCATGAAATCCCAATGGTGTAGAC
CAGTGGCGATGGATCTAGGAGTTTACCAACTGAGACATTTTTCAATTTCTTTCTTGTCAT
CCTTGCTCGGGACTGAAAACGCCTCTGTGAGACTTGACAATAGCTCTTCTGGTGCAAGTG
TGGTAGCTATTGACAACAAAATCGAGCAAGCTATGGATCTGGTGAAAAGCCATTTGATGT
ATGCAGTTAGAGAGGAAGTGGAGGTCCTCAAAGAGCAAATCAAAGAACTAATAGAGAAAA
ATTCCCAGCTGGAGCAGGAAAACAATCTGCTGAAGACACTGGCCAGTCCGGAGCAGCTTG
CCCAGTTCCAGGCCCAGCTGCAGACTGGCTCCCCGCCGGCCACCACACAGCCCCAGGGGA
CCACACAGCCCCCGGCCCAGCCAGCGTCCCAGGGCTCAGGACCGACCGCGTAGCCTCCTA
GGCCCCCCCGCAGAACTGGCTGCTGCTGTCTGAACCGACTGACCGACCGACCGACCGGAG
AGGATGTGCTGGGGGAGGGGGGGGTCCGCCTCCACCACGGTCACCCATTTCAATGCTCAG
CTGCGAAAGAGACGTGAGACTGACATATGCCATTATCTCTTTTTTCCAGTATTAAACCCT
CATGTGCTTTTGGCTTGAAGAAGTTTCTTAGTTGGGCGACTTAAAGGTTAACCAGAGAAT
TAGCATGGATGTACTGGGACCTCATGCAGCGGGGCAGATCCGTGAGAAATGGTTTCATTC
ATGCTGAGGAGCTGTGTGCCTTTCCGCCCCTCCCCTGCTCCGCACCCCCACCTCCACCCC
CACCCCTACCCCTACCCCCACCTCCGAGAGGTCGTCGTGCTTGCTCCTGGCGTGCTGCAC
GCAGTCCCCAAGCCGTGGAGCGCCACTGGACTCTCCTCTCGCTCCTCCCCCACGAGGAAC
CGGAAAGGGGGGTGAAAGTCAAGACCGAAGCTTCATCTCACCTCGGAGGAGGGGAAACGT
AGGTCATTGTACACGTTGACGACTGTCACCAAAATCCATAAAAAAACGAAACAAAAACCC
AAGAGTACTGTGCCTCTTCCCAAAGCAAGGGATGACGCGGGACTATTCCAGAGTGACTGA
AGGGTGACAGGTAGCTGGCACCTCGGCTATCAACGTGAAGGTGGTTTTGCTCATTGTATA
TTTGTGTATGTAGTGTAACTATTTTGTACAATAGAGGACTGTAACTACTATTTAGCTTGT
ACAGACTGAGATTTAGATGTTTCATTGGCCGTCTGAAGAGGTGTGGCTTGTCTTTTATAT
AGAGATCTACATTACAAAATACTCCGTGAAGAAAAACACACCAAACGAAAGAGATTTTAA
GAATTTGGCACAGTTAGTCCCTTTGTGTAATCTGAACTCTTCTAGCTGCTGAATATCTTG
AAGTCAGTTCCTGTTCACTGAAGTCTTTCTGATTGAGCTGGTTGAATACTTTGAAAAATG
ATGCGTTCTAGCTGTTGAAATGGATTTCCCAATAGGGGTTCCTGCATATTACCTGTATAG
TAGCTCTATGCATATGTTTCTGTGCATGCTCTCTACCCAGTTGTAAGGTGTCACTGTATT
TAACTGTTGCACTTGTCAACTTTCAATAAAGCATATAAAATGTTGATAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R4H1_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R4H1_PONPY

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               79-264, + strand, RNAz p=0.949649
               

               
               395-707, - strand, RNAz p=0.980858
               

               
               1214-1329, + strand, RNAz p=0.964504

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-264, + strand, RNAz p=0.949649
               

               
               395-707, - strand, RNAz p=0.980858
               

               
               1214-1329, + strand, RNAz p=0.964504

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of NM_006022, +
               

               
               5' of NM_183422, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006022, +
               

               
               5' of NM_183422, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-343, gnl|bosTau2|chr12 (5560520-5560861)
               

               
               1-343, gnl|Hg17|chr13 (43908971-43908640)
               

               
               1-343, gnl|Mm7|chr14 (71184880-71185191)
               


               
               395-1853, gnl|bosTau2|chr12 (5562484-5563875)
               

               
               395-1853, gnl|Hg17|chr13 (43907020-43905655)
               

               
               395-1853, gnl|Mm7|chr14 (71186766-71188118)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-343, gnl|bosTau2|chr12 (5560520-5560861)
               

               
               1-343, gnl|Hg17|chr13 (43908971-43908640)
               

               
               1-343, gnl|Mm7|chr14 (71184880-71185191)
               


               
               395-1853, gnl|bosTau2|chr12 (5562484-5563875)
               

               
               395-1853, gnl|Hg17|chr13 (43907020-43905655)
               

               
               395-1853, gnl|Mm7|chr14 (71186766-71188118)

Expressed library(ies): 62 entry(ies)

More info

Expressed library(ies): 62 entry(ies)

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               fco (2.35812)
               

               
               tra (1.84638)
               

               
               sug (1.65479)
               

               
               spc (1.36039)
               

               
               hea (1.22699)
               

               
               ret (1.1586)
               

               
               bla (1.11912)
               

               
               mgm (1.08206)
               

               
               sto (1.07894)
               

               
               gul (1.06553)
               

               
               rec (1.03842)
               

               
               ova (1.03306)
               

               
               cbe (0.956938)
               

               
               mgp (0.922722)
               

               
               hyp (0.85702)
               

               
               fhi (0.847889)
               

               
               pgl (0.829384)
               

               
               ebs (0.828108)
               

               
               lyg (0.798616)
               

               
               pan (0.707881)
               

               
               kid (0.648677)
               

               
               sme (0.610874)
               

               
               fcc (0.593354)
               

               
               ssp (0.542079)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               mcp (0.511945)
               

               
               nco (0.485201)
               

               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               tes (0.415628)
               

               
               nca (0.410621)
               

               
               ste (0.405625)
               

               
               ldo (0.38801)
               

               
               cmu (0.372787)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               thg (0.253582)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 62 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (2.35812)
               

               
               tra (1.84638)
               

               
               sug (1.65479)
               

               
               spc (1.36039)
               

               
               hea (1.22699)
               

               
               ret (1.1586)
               

               
               bla (1.11912)
               

               
               mgm (1.08206)
               

               
               sto (1.07894)
               

               
               gul (1.06553)
               

               
               rec (1.03842)
               

               
               ova (1.03306)
               

               
               cbe (0.956938)
               

               
               mgp (0.922722)
               

               
               hyp (0.85702)
               

               
               fhi (0.847889)
               

               
               pgl (0.829384)
               

               
               ebs (0.828108)
               

               
               lyg (0.798616)
               

               
               pan (0.707881)
               

               
               kid (0.648677)
               

               
               sme (0.610874)
               

               
               fcc (0.593354)
               

               
               ssp (0.542079)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               mcp (0.511945)
               

               
               nco (0.485201)
               

               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               lin (0.436808)
               

               
               tes (0.415628)
               

               
               nca (0.410621)
               

               
               ste (0.405625)
               

               
               ldo (0.38801)
               

               
               cmu (0.372787)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               thg (0.253582)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	79-264, + strand, RNAz p=0.949649
	395-707, - strand, RNAz p=0.980858
	1214-1329, + strand, RNAz p=0.964504

	1-343, gnl\|bosTau2\|chr12 (5560520-5560861)
	1-343, gnl\|Hg17\|chr13 (43908971-43908640)
	1-343, gnl\|Mm7\|chr14 (71184880-71185191)

	395-1853, gnl\|bosTau2\|chr12 (5562484-5563875)
	395-1853, gnl\|Hg17\|chr13 (43907020-43905655)
	395-1853, gnl\|Mm7\|chr14 (71186766-71188118)

	fco (2.35812)
	tra (1.84638)
	sug (1.65479)
	spc (1.36039)
	hea (1.22699)
	ret (1.1586)
	bla (1.11912)
	mgm (1.08206)
	sto (1.07894)
	gul (1.06553)
	rec (1.03842)
	ova (1.03306)
	cbe (0.956938)
	mgp (0.922722)
	hyp (0.85702)
	fhi (0.847889)
	pgl (0.829384)
	ebs (0.828108)
	lyg (0.798616)
	pan (0.707881)
	kid (0.648677)
	sme (0.610874)
	fcc (0.593354)
	ssp (0.542079)
	sin (0.524843)
	pro (0.512033)
	mcp (0.511945)
	nco (0.485201)
	fat (0.442282)
	liv (0.438853)
	lin (0.436808)
	tes (0.415628)
	nca (0.410621)
	ste (0.405625)
	ldo (0.38801)
	cmu (0.372787)
	vin (0.332557)
	mga (0.32041)
	ski (0.29347)
	cte (0.29274)
	spl (0.286369)
	hlv (0.278513)
	fce (0.271592)
	ute (0.265569)
	thg (0.253582)
	ecc (0.23007)
	ece (0.229305)
	aor (0.195274)
	fbs (0.175346)
	duo (0.172801)
	eye (0.170503)
	cki (0.165235)
	cje (0.165235)
	bfe (0.149858)
	pty (0.142714)
	lnt (0.142308)
	cst (0.140036)
	eep (0.122564)
	cly (0.120642)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)