Non-Coding RNA Search

Ss1.1-rspc033_b4.5

Sequence:


               
               CTAAAATTCACTTTACTTTTACTCACAGAGAAAGTTGGCTTTGACGTCTCTTAAAGATAA
TTGTGCTAGGTGCTGATCAGCCAGTCAGTTCACCTGGCTTTAATCTTTATAGGACCTCTA
AACTAATTTTCCTACACTGTGACTAAAAGGTAGGCAGATGCTTGGAATGAATTATATGGT
ATATTCACATGGATCCCTAAACATTACTTTATATAATAAGGTAATATCAGGACTATATCT
ACAGGTTGCTTTTGTCAAGAGCCACATTCATGCAATTTTCACTTTTTTGAACTCTTGTAC
CTTTACATTTGTACTCCAGATGTGAAGACCACATTTCTGAATGACTAAGCCTATGATTAT
ATTTTGGTTATATGCTGCTCTTTTGCTTGTGTGTGTGTGTGTGTGTGTTTCTCCTCTATG
AATAATTTTATATTTTATGCTACTTCTTGAAAATTTATTCTTTGATGCTGTAAAAGAATA
ACCGGATGGTTTCTACACACAATCTCTCCCTGCAGGATGGTGGATTGTTAAATTAGAGGA
ATGCTCTTTGAGATATCAACATTTATGGTGGAGACTAAAAAAATATTAATGCCAAATGTG
TTTTGGTCAATTACTAGAGAATTCTGTACAAATGCGTCTTCTCTCCCAATGCTGTCCAGT
TTGCCTTGTTGAATGGCAAGTAGTAGGGAGAACAGAACAGAAGTGTGGATTAAGACTTTT
AAAGGAAATAGTATCGTATGATTAAGGAAATTAGAATTTGTAGAAATACTGGGATCAATG
AAGAAATAAAAATGTCTGTCTAGAATGTAGCATCTAGAGAGTTTTTGAAGCCCTGACTTC
ACATGAGGAAGTGATGTTTCTGTTCACAGCCAGCCTCAGCCATCACCAAGACTCATGGGG
GGAATATCACTTCTTTTCTAGAGAAATAACTGAAAGCAAATAAAAATTCTTAACAGTCCC
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAAATTCACTTTACTTTTACTCACAGAGAAAGTTGGCTTTGACGTCTCTTAAAGATAA
TTGTGCTAGGTGCTGATCAGCCAGTCAGTTCACCTGGCTTTAATCTTTATAGGACCTCTA
AACTAATTTTCCTACACTGTGACTAAAAGGTAGGCAGATGCTTGGAATGAATTATATGGT
ATATTCACATGGATCCCTAAACATTACTTTATATAATAAGGTAATATCAGGACTATATCT
ACAGGTTGCTTTTGTCAAGAGCCACATTCATGCAATTTTCACTTTTTTGAACTCTTGTAC
CTTTACATTTGTACTCCAGATGTGAAGACCACATTTCTGAATGACTAAGCCTATGATTAT
ATTTTGGTTATATGCTGCTCTTTTGCTTGTGTGTGTGTGTGTGTGTGTTTCTCCTCTATG
AATAATTTTATATTTTATGCTACTTCTTGAAAATTTATTCTTTGATGCTGTAAAAGAATA
ACCGGATGGTTTCTACACACAATCTCTCCCTGCAGGATGGTGGATTGTTAAATTAGAGGA
ATGCTCTTTGAGATATCAACATTTATGGTGGAGACTAAAAAAATATTAATGCCAAATGTG
TTTTGGTCAATTACTAGAGAATTCTGTACAAATGCGTCTTCTCTCCCAATGCTGTCCAGT
TTGCCTTGTTGAATGGCAAGTAGTAGGGAGAACAGAACAGAAGTGTGGATTAAGACTTTT
AAAGGAAATAGTATCGTATGATTAAGGAAATTAGAATTTGTAGAAATACTGGGATCAATG
AAGAAATAAAAATGTCTGTCTAGAATGTAGCATCTAGAGAGTTTTTGAAGCCCTGACTTC
ACATGAGGAAGTGATGTTTCTGTTCACAGCCAGCCTCAGCCATCACCAAGACTCATGGGG
GGAATATCACTTCTTTTCTAGAGAAATAACTGAAAGCAAATAAAAATTCTTAACAGTCCC
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               4-162, + strand, RNAz p=0.992227

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-162, + strand, RNAz p=0.992227

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               19-146, + strand, RNAmicro p=0.999671

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               19-146, + strand, RNAmicro p=0.999671

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-958, gnl|bosTau2|chr2 (33663294-33664253)
               

               
               4-958, gnl|Hg17|chr2 (149707238-149708120)
               

               
               4-958, gnl|Mm7|chr2 (49780568-49781439)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-958, gnl|bosTau2|chr2 (33663294-33664253)
               

               
               4-958, gnl|Hg17|chr2 (149707238-149708120)
               

               
               4-958, gnl|Mm7|chr2 (49780568-49781439)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cut (0.339847)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.339847)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

	4-958, gnl\|bosTau2\|chr2 (33663294-33664253)
	4-958, gnl\|Hg17\|chr2 (149707238-149708120)
	4-958, gnl\|Mm7\|chr2 (49780568-49781439)

	cut (0.339847)
	spc (0.226732)
	fcc (0.197785)
	fty (0.17584)
	fco (0.157208)
	pgl (0.118483)
	ecc (0.115035)