Non-Coding RNA Search

Ss1.1-rspc033_c5.5

Sequence:


               
               CTACCTGATCCACCCCACCAAGCTGACCTACGATGAGGCGGTGCAGGCTTGTCTCAATGA
TGGTGCTCAGATTGCAAAAGTGGGCCAGATATTCGCTGCCTGGAAACTTCTGGGATATGA
CCGCTGCGATGCGGGCTGGCTGGCGGACGGCAGCGTCCGCTACCCCATCTCTAGGCCAAG
AAGGCGCTGCAGTCCAACAGAGGCTGCAGTGCGCTTTGTGGGTTTCCCAGACAAAAAGCA
TAAGCTGTATGGTGTCTACTGCTTCAGAGCATACAACTGAGCGTGCCCCTAGAGCACGGC
AGTTTTAAAGTCATTAAGAACATGTGAAAGGTTTCTTTTTCAATATGAACTCATGCAAGT
TACCAAAACTGTGATGAACCCTTTTTTACTTACTGTAAAGAGTCATTTTCATAAAGACCA
ATTCATTAATTTGTTTTTGTAAAGCTATCATTCAATATATATTATAAATTAATATAATTT
TAAGGGAAACATGACATAAGGAGGCTTTAGAGCCAAACCATTTAGGCTACATCACCCCAA
CCAAGTATCCTTTCATGAGCGGGGCATGCAATATAGCTTGAGGATCGCTAGGATTAAATG
CAGGAAAGTAAAGCTACTCAGAGCAGCAGCTGCCACAAGCACAAGTTTTACACATTTGTA
CAATTTTGAAATGCATGATAATAAGCAAATTTGAGCAGCAGATTTGAAATACAGGCTTCT
TTACATAAACTGAGATTGTGAGAGGTGGCACAAAACTTAGTTTCACAAGGGAACAATCTA
CACTTTTCTAAAAGTCAATCTTTCAAGTCTCCAATAGACAGAATATTTTTCTCTTTAAAA
TCCTGCCTTTTTGACCAAAAAACAAACAAACAAAAATTCATATGGACTCCAATGCATTAA
TAACAAGCACAGTCAAAACCTCTTAATGACCCTATTTATACGAAGCATGAAACTAAAATA
AGCCAATAATATTTAACCAATGAGAGATTCCTACCTTCTTCTAATTAAAATTACACAGGC
CTGAGAAGCATTGTTTTATCTTTTGAGTAGCTTTACTGAGTTCTATTTAAATTCTAAGGG
TCATTTGCTAAGCAGCATTTAGCATTTACTCAGGGCAGTTATATAGATAAACTGCTGGAC
AGAAAAATTGTAAAATTTAGCAGCTTGATTTTATGTTAGCCTATGAAATGTTATTGTCCT
ATTAAATAACTTTAAAGTATTTAATATTTCCTTCTTATTTACAATTACGTGAAAAAATTT
AAATCATAAAAGGAATGAATAACTATACACTTGCCTCACCAAGAAATAAGAACCCAACTT
TCAAAATTCTTATTATTCCTGTTTGTATACAAACTAGAAAGCCCAACTAGTGCCTGTGTT
TGGGGAAAAAAGTCAACAAAGTAGTTTTAAACCTTTCTCCATATAGAAAATGTGGTCAGT
TATGCCACTTTCCTTGCTGATCATCATTAGGCTTAAATGAAATGCTGAAGCTGTCATCAA
AGAGTTTACACTAAAATCTTCAGGGTTTTAAAAGCAAGGTAAGACCAGCTTCAGAAAAAA
CAACTTTCCCCATTAGCAGCTTCACTCTTAAATAAAGCTCGGTTTTCTTATATTTTTATG
ACTGTTGAGACCCCACAGGGACCAATATTTGTATTCAAATTACATTTCATGGTTTCCCAT
TGTTTCACAATGAGTTCTAATAAATGGGATTTAGTATAATAATCCAAGTATGACATAGCT
GGTATGCTTTCATGAATGTTTTTATGTAGATTTTCCTCCCATGAACATGAGCAAATAAAT
CTGTTTCCTGAAAAAAAAAAAAAAAAAAAAAAAAAACTGTAATAACTCTAATAAATTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACCTGATCCACCCCACCAAGCTGACCTACGATGAGGCGGTGCAGGCTTGTCTCAATGA
TGGTGCTCAGATTGCAAAAGTGGGCCAGATATTCGCTGCCTGGAAACTTCTGGGATATGA
CCGCTGCGATGCGGGCTGGCTGGCGGACGGCAGCGTCCGCTACCCCATCTCTAGGCCAAG
AAGGCGCTGCAGTCCAACAGAGGCTGCAGTGCGCTTTGTGGGTTTCCCAGACAAAAAGCA
TAAGCTGTATGGTGTCTACTGCTTCAGAGCATACAACTGAGCGTGCCCCTAGAGCACGGC
AGTTTTAAAGTCATTAAGAACATGTGAAAGGTTTCTTTTTCAATATGAACTCATGCAAGT
TACCAAAACTGTGATGAACCCTTTTTTACTTACTGTAAAGAGTCATTTTCATAAAGACCA
ATTCATTAATTTGTTTTTGTAAAGCTATCATTCAATATATATTATAAATTAATATAATTT
TAAGGGAAACATGACATAAGGAGGCTTTAGAGCCAAACCATTTAGGCTACATCACCCCAA
CCAAGTATCCTTTCATGAGCGGGGCATGCAATATAGCTTGAGGATCGCTAGGATTAAATG
CAGGAAAGTAAAGCTACTCAGAGCAGCAGCTGCCACAAGCACAAGTTTTACACATTTGTA
CAATTTTGAAATGCATGATAATAAGCAAATTTGAGCAGCAGATTTGAAATACAGGCTTCT
TTACATAAACTGAGATTGTGAGAGGTGGCACAAAACTTAGTTTCACAAGGGAACAATCTA
CACTTTTCTAAAAGTCAATCTTTCAAGTCTCCAATAGACAGAATATTTTTCTCTTTAAAA
TCCTGCCTTTTTGACCAAAAAACAAACAAACAAAAATTCATATGGACTCCAATGCATTAA
TAACAAGCACAGTCAAAACCTCTTAATGACCCTATTTATACGAAGCATGAAACTAAAATA
AGCCAATAATATTTAACCAATGAGAGATTCCTACCTTCTTCTAATTAAAATTACACAGGC
CTGAGAAGCATTGTTTTATCTTTTGAGTAGCTTTACTGAGTTCTATTTAAATTCTAAGGG
TCATTTGCTAAGCAGCATTTAGCATTTACTCAGGGCAGTTATATAGATAAACTGCTGGAC
AGAAAAATTGTAAAATTTAGCAGCTTGATTTTATGTTAGCCTATGAAATGTTATTGTCCT
ATTAAATAACTTTAAAGTATTTAATATTTCCTTCTTATTTACAATTACGTGAAAAAATTT
AAATCATAAAAGGAATGAATAACTATACACTTGCCTCACCAAGAAATAAGAACCCAACTT
TCAAAATTCTTATTATTCCTGTTTGTATACAAACTAGAAAGCCCAACTAGTGCCTGTGTT
TGGGGAAAAAAGTCAACAAAGTAGTTTTAAACCTTTCTCCATATAGAAAATGTGGTCAGT
TATGCCACTTTCCTTGCTGATCATCATTAGGCTTAAATGAAATGCTGAAGCTGTCATCAA
AGAGTTTACACTAAAATCTTCAGGGTTTTAAAAGCAAGGTAAGACCAGCTTCAGAAAAAA
CAACTTTCCCCATTAGCAGCTTCACTCTTAAATAAAGCTCGGTTTTCTTATATTTTTATG
ACTGTTGAGACCCCACAGGGACCAATATTTGTATTCAAATTACATTTCATGGTTTCCCAT
TGTTTCACAATGAGTTCTAATAAATGGGATTTAGTATAATAATCCAAGTATGACATAGCT
GGTATGCTTTCATGAATGTTTTTATGTAGATTTTCCTCCCATGAACATGAGCAAATAAAT
CTGTTTCCTGAAAAAAAAAAAAAAAAAAAAAAAAAACTGTAATAACTCTAATAAATTCAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8HXB2_MACFA

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8HXB2_MACFA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               120-279, + strand, RNAz p=0.993322
               

               
               1666-1785, - strand, RNAz p=0.889904

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-279, + strand, RNAz p=0.993322
               

               
               1666-1785, - strand, RNAz p=0.889904

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               164-250, - strand, RNAmicro p=0.998549
               

               
               151-247, + strand, RNAmicro p=0.989928

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               164-250, - strand, RNAmicro p=0.998549
               

               
               151-247, + strand, RNAmicro p=0.989928

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1860, gnl|bosTau2|chr7 (55940366-55942217)
               

               
               1-1860, gnl|Hg17|chr5 (82973350-82971516)
               

               
               1-1860, gnl|Mm7|chr13 (86682244-86684072)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1860, gnl|bosTau2|chr7 (55940366-55942217)
               

               
               1-1860, gnl|Hg17|chr5 (82973350-82971516)
               

               
               1-1860, gnl|Mm7|chr13 (86682244-86684072)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               nca (0.958117)
               

               
               ute (0.398353)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               rec (0.17307)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.958117)
               

               
               ute (0.398353)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               rec (0.17307)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	120-279, + strand, RNAz p=0.993322
	1666-1785, - strand, RNAz p=0.889904

	164-250, - strand, RNAmicro p=0.998549
	151-247, + strand, RNAmicro p=0.989928

	1-1860, gnl\|bosTau2\|chr7 (55940366-55942217)
	1-1860, gnl\|Hg17\|chr5 (82973350-82971516)
	1-1860, gnl\|Mm7\|chr13 (86682244-86684072)

	nca (0.958117)
	ute (0.398353)
	tra (0.246184)
	mgp (0.230681)
	rec (0.17307)
	pla (0.133672)
	ova (0.129132)
	ebs (0.118301)
	spc (0.113366)