Non-Coding RNA Search

Ss1.1-rspc033_f12.5

Sequence:


               
               TTTATTGCCTGCCTCCACCCACCGGTTCAGAAGTTAAAATATGGAGCCTTAAAGGGTCAG
CTGATTTTTGTATTGCTAAAGTTTGTGAAATTGTACTTTTTCCAAGTGTTTGCAACTTTA
AAAAGTGACCATAATGAGTTGGAATTTCACAAGCTGCGAATAATTCCCTAGCACCTAGCA
AACTGTGAAATCTTCTTTGAAGACTATCTCCTGAAAGTTATTTTGAAATAGGAAAAAAGA
ACCATGTTTGAAATAGACCATTTTCTTCTCTTTTTAAAAATCTATTTATATTTCCAATTT
TTAAACAGCCTTCAAAAAAGTGAGGTGGAAAAAAAAATAATAGGAAGATATTTAGGACAG
CAAAACTCTGAGTCTGAGTAAGTACATATTCTAATTCTTATAGGGCTTTGAGAGGATGAG
GGCCATCTTTTTCAGTTTTGTATTATTATCTGTGTGCAAGTTGGTTGTATCTAAGATGCC
ACATTTTGTTAAAATGGTGTTTATTAGCTTGGAAACTGACTCAGCCTCATGTTGCTCCAA
ATTAGTGTTTAAGGCTCCCATGAGTTGCAGATAAAAGGATTATTTTAATAAGTAGAAGGA
GATGATTCGCCTTTTGGTTTGTAAATATATAAAAGTGTCTATAAGGTCTTTACTTTCTGT
CAGCATTTATATTAAATGATAAATTAATGAGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATTGCCTGCCTCCACCCACCGGTTCAGAAGTTAAAATATGGAGCCTTAAAGGGTCAG
CTGATTTTTGTATTGCTAAAGTTTGTGAAATTGTACTTTTTCCAAGTGTTTGCAACTTTA
AAAAGTGACCATAATGAGTTGGAATTTCACAAGCTGCGAATAATTCCCTAGCACCTAGCA
AACTGTGAAATCTTCTTTGAAGACTATCTCCTGAAAGTTATTTTGAAATAGGAAAAAAGA
ACCATGTTTGAAATAGACCATTTTCTTCTCTTTTTAAAAATCTATTTATATTTCCAATTT
TTAAACAGCCTTCAAAAAAGTGAGGTGGAAAAAAAAATAATAGGAAGATATTTAGGACAG
CAAAACTCTGAGTCTGAGTAAGTACATATTCTAATTCTTATAGGGCTTTGAGAGGATGAG
GGCCATCTTTTTCAGTTTTGTATTATTATCTGTGTGCAAGTTGGTTGTATCTAAGATGCC
ACATTTTGTTAAAATGGTGTTTATTAGCTTGGAAACTGACTCAGCCTCATGTTGCTCCAA
ATTAGTGTTTAAGGCTCCCATGAGTTGCAGATAAAAGGATTATTTTAATAAGTAGAAGGA
GATGATTCGCCTTTTGGTTTGTAAATATATAAAAGTGTCTATAAGGTCTTTACTTTCTGT
CAGCATTTATATTAAATGATAAATTAATGAGAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               79-169, + strand, RNAz p=0.885472

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-169, + strand, RNAz p=0.885472

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-697, gnl|bosTau2|chr21 (47599891-47599178)
               

               
               1-697, gnl|Hg17|chr1 (170632742-170632007)
               

               
               1-697, gnl|Mm7|chr1 (160936359-160937061)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-697, gnl|bosTau2|chr21 (47599891-47599178)
               

               
               1-697, gnl|Hg17|chr1 (170632742-170632007)
               

               
               1-697, gnl|Mm7|chr1 (160936359-160937061)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fce (0.271592)
               

               
               tes (0.207814)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               tes (0.207814)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	1-697, gnl\|bosTau2\|chr21 (47599891-47599178)
	1-697, gnl\|Hg17\|chr1 (170632742-170632007)
	1-697, gnl\|Mm7\|chr1 (160936359-160937061)

	fce (0.271592)
	tes (0.207814)
	ste (0.135208)
	thg (0.126791)
	spc (0.113366)