Non-Coding RNA Search

Ss1.1-rspc033_g21.5

Sequence:


               
               AATCAGAAAGGGGAACACCAAGCAAAGAATTGATGAATTTGAGTCTATGATGCATTTATA
AGCTAACTGGAACTGAGAAGTTATCAAGCCCACTAAAGCAAAAGCTAATTCTATTTTCCT
GAGATGAATCTTTGTGTGCCTTATTTGAATCATCCCCTTTAAATAAGTGGAAGCTTAATC
TCAGTTTCACTGTAGAATAATGTGGGAATAACCCTAGAGAATATTCAGTATGGTAACCTC
AAATCAAAAAACTTGATTCACCCTTGGACATTTGCTTGTTAAAACTTCACTAATATAGCC
TTGTGTGATAAGCACTAAACAGCCAGCACCACTGGGGAATCTGGCATTTAAAAGTTTGGC
TTTAAACGTAGCAAAGCTGGGAAATGATGTCTTTCTTCCTGCCTACTAAGGGTGATAGAA
AGTCAGGTATTGAATCTCTCTTTTAAAGGTGGTTTCATAGACTCTGGCAATAAACTTTCC
AAAATGCTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCAGAAAGGGGAACACCAAGCAAAGAATTGATGAATTTGAGTCTATGATGCATTTATA
AGCTAACTGGAACTGAGAAGTTATCAAGCCCACTAAAGCAAAAGCTAATTCTATTTTCCT
GAGATGAATCTTTGTGTGCCTTATTTGAATCATCCCCTTTAAATAAGTGGAAGCTTAATC
TCAGTTTCACTGTAGAATAATGTGGGAATAACCCTAGAGAATATTCAGTATGGTAACCTC
AAATCAAAAAACTTGATTCACCCTTGGACATTTGCTTGTTAAAACTTCACTAATATAGCC
TTGTGTGATAAGCACTAAACAGCCAGCACCACTGGGGAATCTGGCATTTAAAAGTTTGGC
TTTAAACGTAGCAAAGCTGGGAAATGATGTCTTTCTTCCTGCCTACTAAGGGTGATAGAA
AGTCAGGTATTGAATCTCTCTTTTAAAGGTGGTTTCATAGACTCTGGCAATAAACTTTCC
AAAATGCTAAAAAAAAAAAAAAAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-391, gnl|bosTau2|chr2 (26580721-26581104)
               

               
               1-391, gnl|canFam2|chr36 (6360947-6361816)
               

               
               1-391, gnl|dasNov1|scaffold_278 (88735-89622)
               

               
               1-391, gnl|echTel1|scaffold_290701 (93019-92201)
               

               
               1-391, gnl|hg17|chr2 (158002349-158003240)
               

               
               1-391, gnl|Hg17|chr2 (158003351-158002963)
               

               
               1-391, gnl|loxAfr1|scaffold_3481 (132088-131225)
               

               
               1-391, gnl|mm7|chr2 (58047533-58048392)
               

               
               1-391, gnl|Mm7|chr2 (58048502-58048138)
               

               
               1-391, gnl|monDom2|scaffold_2 (50700067-50700981)
               

               
               1-391, gnl|oryCun1|scaffold_200309 (101659-102537)
               

               
               1-391, gnl|panTro1|chr13 (47203616-47204507)
               

               
               1-391, gnl|rheMac2|chr12 (20922997-20923887)
               

               
               1-391, gnl|rn3|chr3 (39718858-39719701)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-391, gnl|bosTau2|chr2 (26580721-26581104)
               

               
               1-391, gnl|canFam2|chr36 (6360947-6361816)
               

               
               1-391, gnl|dasNov1|scaffold_278 (88735-89622)
               

               
               1-391, gnl|echTel1|scaffold_290701 (93019-92201)
               

               
               1-391, gnl|hg17|chr2 (158002349-158003240)
               

               
               1-391, gnl|Hg17|chr2 (158003351-158002963)
               

               
               1-391, gnl|loxAfr1|scaffold_3481 (132088-131225)
               

               
               1-391, gnl|mm7|chr2 (58047533-58048392)
               

               
               1-391, gnl|Mm7|chr2 (58048502-58048138)
               

               
               1-391, gnl|monDom2|scaffold_2 (50700067-50700981)
               

               
               1-391, gnl|oryCun1|scaffold_200309 (101659-102537)
               

               
               1-391, gnl|panTro1|chr13 (47203616-47204507)
               

               
               1-391, gnl|rheMac2|chr12 (20922997-20923887)
               

               
               1-391, gnl|rn3|chr3 (39718858-39719701)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               spc (0.566829)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.566829)
               

               
               hyp (0.142837)

	1-391, gnl\|bosTau2\|chr2 (26580721-26581104)
	1-391, gnl\|canFam2\|chr36 (6360947-6361816)
	1-391, gnl\|dasNov1\|scaffold_278 (88735-89622)
	1-391, gnl\|echTel1\|scaffold_290701 (93019-92201)
	1-391, gnl\|hg17\|chr2 (158002349-158003240)
	1-391, gnl\|Hg17\|chr2 (158003351-158002963)
	1-391, gnl\|loxAfr1\|scaffold_3481 (132088-131225)
	1-391, gnl\|mm7\|chr2 (58047533-58048392)
	1-391, gnl\|Mm7\|chr2 (58048502-58048138)
	1-391, gnl\|monDom2\|scaffold_2 (50700067-50700981)
	1-391, gnl\|oryCun1\|scaffold_200309 (101659-102537)
	1-391, gnl\|panTro1\|chr13 (47203616-47204507)
	1-391, gnl\|rheMac2\|chr12 (20922997-20923887)
	1-391, gnl\|rn3\|chr3 (39718858-39719701)