Non-Coding RNA Search

Ss1.1-rspc033_m20.5

Sequence:


               
               GGTGTCGCGAGCCGCATCCAGAGCCGCTGACGAGGACCCGGGATGTCGGAGCTGGAGAAG
GCCGTGGTGGCCCTGATTGACGTCTTCCATCAGTATTCTGGGAGGGAGGGGGACAAGCAC
AAGCTGAAGAAATCCGAACTCAAGGAGCTCATCAACAGCGAGCTTTCCCACTTCCTGGAG
GAAATCAAAGAGCAGGAGGTCGTGGACAAAGTCATGGAGACACTGGACAGCGATGGAGAT
GGCGAGTGTGACTTCCAGGAATTCATGGCTTTTGTCGCCATGGTTACCACTGCCTGCCAC
GAGTTCTTTGAACACGAGTGAACTGGAGAAAACCGACACGCAGTTCCTGCAGCGGAGACG
TGCGCATCGTGCAGGGCAGTGGAGGCAGGGCTTTGGCAGGACAGTAGGCGCTGAGCTTTC
CGGCTGTGTTGTAGCTAATTAGGAAGCTTGATTTGCTTTGTGAATGGAAAATTTAAACCT
CTTTCCAGGGGCAGTTTTTAGTGGCCCCCGTCATTGCTCCTGCAATAGTAAGCATACAGT
TAGCTGACTGGTCCCAGGACTGCTGGTAATCTTCATTTAGGAAAGTCAGTTCTCGGTCAC
GAAGCGTGTGCTCTCCTAGCTGTGTAGACCCTTAGCCCAGAAAAAACAAACTGACCAGGA
GCATTGGGGTTTTCTTAAGCTTCCACTACATTTAAAAATACGAAGCCTTGTCCACTATCC
TTCGCAAAGGCTGCCCTTCGTTAAATCTGTTCCTCACTGGGGCAAATGAGACCTATCATG
GGAGGGTGGCCTGACCATCTGTGCCACCCACCCAAAGAGCGCGGCCACATCTAGATCCCT
TCCCTGCGGTGTGCTGTGATTGTCGCGCATGTGATGCTGCCAGTTCTGGGTGGAACATCT
GCCTCAGAAAGCAAGTGCTGACATTATCACTGTGATTGGAACTGAGAATGGAAATTCTAC
CCTCGGTGGGGTTCTCCTCAGAGGAACACTCGCTGCCAGATCTGGGGGGGCCACGTGGCT
CAGGTGGCACGAGCGGGAGCAGGGGAGCTCAGGTGGGTCTCACGCTGCCTTGGAGACAGC
TGTGCCCACCTCCTGCCCAGTCTGTAGAAGGAGGGCTTCCGGAAGATGTGTCTGGTCCGC
TGGAGAAGGTCGTTCCTGACCTGTGGAATGTGAAGCCAGGGAGCCTATTTATGGCCTTTA
TGCTTCTGTGTCCACAAATTCAAATACATCAAGTTTCAAATCAAATAGTCAAGTTGCAAA
TACTAGAAATCACTTCCAAGAAAATTCAAATTACGCTTTCCACCCTTTTTCTGATTTGCT
GTTTTTAAGGACAGACTTGGGAGATTCACGAACCAATTGATCGCTTGTATTTGCATTAAA
TAAAAAGCATTGTAACAAGTCTCCAAAAAAAAAAAACATGAAATAAAAGCTAAATGCCTG
CAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGTCGCGAGCCGCATCCAGAGCCGCTGACGAGGACCCGGGATGTCGGAGCTGGAGAAG
GCCGTGGTGGCCCTGATTGACGTCTTCCATCAGTATTCTGGGAGGGAGGGGGACAAGCAC
AAGCTGAAGAAATCCGAACTCAAGGAGCTCATCAACAGCGAGCTTTCCCACTTCCTGGAG
GAAATCAAAGAGCAGGAGGTCGTGGACAAAGTCATGGAGACACTGGACAGCGATGGAGAT
GGCGAGTGTGACTTCCAGGAATTCATGGCTTTTGTCGCCATGGTTACCACTGCCTGCCAC
GAGTTCTTTGAACACGAGTGAACTGGAGAAAACCGACACGCAGTTCCTGCAGCGGAGACG
TGCGCATCGTGCAGGGCAGTGGAGGCAGGGCTTTGGCAGGACAGTAGGCGCTGAGCTTTC
CGGCTGTGTTGTAGCTAATTAGGAAGCTTGATTTGCTTTGTGAATGGAAAATTTAAACCT
CTTTCCAGGGGCAGTTTTTAGTGGCCCCCGTCATTGCTCCTGCAATAGTAAGCATACAGT
TAGCTGACTGGTCCCAGGACTGCTGGTAATCTTCATTTAGGAAAGTCAGTTCTCGGTCAC
GAAGCGTGTGCTCTCCTAGCTGTGTAGACCCTTAGCCCAGAAAAAACAAACTGACCAGGA
GCATTGGGGTTTTCTTAAGCTTCCACTACATTTAAAAATACGAAGCCTTGTCCACTATCC
TTCGCAAAGGCTGCCCTTCGTTAAATCTGTTCCTCACTGGGGCAAATGAGACCTATCATG
GGAGGGTGGCCTGACCATCTGTGCCACCCACCCAAAGAGCGCGGCCACATCTAGATCCCT
TCCCTGCGGTGTGCTGTGATTGTCGCGCATGTGATGCTGCCAGTTCTGGGTGGAACATCT
GCCTCAGAAAGCAAGTGCTGACATTATCACTGTGATTGGAACTGAGAATGGAAATTCTAC
CCTCGGTGGGGTTCTCCTCAGAGGAACACTCGCTGCCAGATCTGGGGGGGCCACGTGGCT
CAGGTGGCACGAGCGGGAGCAGGGGAGCTCAGGTGGGTCTCACGCTGCCTTGGAGACAGC
TGTGCCCACCTCCTGCCCAGTCTGTAGAAGGAGGGCTTCCGGAAGATGTGTCTGGTCCGC
TGGAGAAGGTCGTTCCTGACCTGTGGAATGTGAAGCCAGGGAGCCTATTTATGGCCTTTA
TGCTTCTGTGTCCACAAATTCAAATACATCAAGTTTCAAATCAAATAGTCAAGTTGCAAA
TACTAGAAATCACTTCCAAGAAAATTCAAATTACGCTTTCCACCCTTTTTCTGATTTGCT
GTTTTTAAGGACAGACTTGGGAGATTCACGAACCAATTGATCGCTTGTATTTGCATTAAA
TAAAAAGCATTGTAACAAGTCTCCAAAAAAAAAAAACATGAAATAAAAGCTAAATGCCTG
CAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               S100B_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               S100B_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               258-358, - strand, RNAz p=0.929287

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               258-358, - strand, RNAz p=0.929287

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               179-1445, gnl|bosTau2|chr1 (65419817-65421103)
               

               
               179-1445, gnl|Mm7|chr10 (75915577-75916972)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               179-1445, gnl|bosTau2|chr1 (65419817-65421103)
               

               
               179-1445, gnl|Mm7|chr10 (75915577-75916972)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               spc (6.91532)
               

               
               cbe (3.82775)
               

               
               fbs (2.45485)
               

               
               cbr (2.04761)
               

               
               cbl (1.60716)
               

               
               hyp (1.5712)
               

               
               fhi (1.5262)
               

               
               fco (1.10046)
               

               
               sto (1.07894)
               

               
               pgl (0.947867)
               

               
               cut (0.849618)
               

               
               cmu (0.745573)
               

               
               med (0.465008)
               

               
               cst (0.420109)
               

               
               fcc (0.39557)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (6.91532)
               

               
               cbe (3.82775)
               

               
               fbs (2.45485)
               

               
               cbr (2.04761)
               

               
               cbl (1.60716)
               

               
               hyp (1.5712)
               

               
               fhi (1.5262)
               

               
               fco (1.10046)
               

               
               sto (1.07894)
               

               
               pgl (0.947867)
               

               
               cut (0.849618)
               

               
               cmu (0.745573)
               

               
               med (0.465008)
               

               
               cst (0.420109)
               

               
               fcc (0.39557)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

	179-1445, gnl\|bosTau2\|chr1 (65419817-65421103)
	179-1445, gnl\|Mm7\|chr10 (75915577-75916972)

	spc (6.91532)
	cbe (3.82775)
	fbs (2.45485)
	cbr (2.04761)
	cbl (1.60716)
	hyp (1.5712)
	fhi (1.5262)
	fco (1.10046)
	sto (1.07894)
	pgl (0.947867)
	cut (0.849618)
	cmu (0.745573)
	med (0.465008)
	cst (0.420109)
	fcc (0.39557)
	nca (0.273748)
	fce (0.271592)
	pla (0.267344)
	cty (0.20816)
	tes (0.207814)
	ill (0.175593)
	cje (0.165235)
	nco (0.161734)
	cli (0.152812)
	csk (0.140746)
	ste (0.135208)
	ute (0.132784)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	ebs (0.118301)