Non-Coding RNA Search

Ss1.1-rspc034_k11.5

Sequence:


               
               TTAAAAAAAAAAAAAAAAAAAAAAAAATCAGTCATCATCTAATACAAGTTTATATTCTAT
ATACAAAACTAAGGATGTCTTAAAAAAAAATCATGACTTTAAACTTCCACCGACGGGGCA
GGTAGGAGATAAAAATGAATTCTGAATTGTTCCTAGAGTATTCATATTTTTTACCTTGGG
GCAGGGCAGGGAATTGAGGTTACCTGACCTTGTTTGAGAGTGTGGGTTTTTTAAAAAAAA
ACTTCATCACTTGTTTGTTATCTCTAAGAGACTCTGAGCCAAGTGATCCTTTTATCCTGC
TACAGTCTATAAAGAACTTAAAAAAACAAGGGCCGCCAAAACTTAAATCACTCTCGATTT
CCTCTTTCATTTTCTAATGGCTCATGTTTTAAAATATATATATATGTATCTATTCTGTTT
CTTGGATAAAATTTTACCAAGGATCAAAAAAAAAAAAAAAGAAATTCTAGAATTTAAATG
GCGAGATCTCTATATCACAGTGACTTTCTTCTCAAACTGACATGTTTAGGTTTTAAGCAA
ATAAAGTACCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAAAAAAAAAAAAAAAAAAAAAAATCAGTCATCATCTAATACAAGTTTATATTCTAT
ATACAAAACTAAGGATGTCTTAAAAAAAAATCATGACTTTAAACTTCCACCGACGGGGCA
GGTAGGAGATAAAAATGAATTCTGAATTGTTCCTAGAGTATTCATATTTTTTACCTTGGG
GCAGGGCAGGGAATTGAGGTTACCTGACCTTGTTTGAGAGTGTGGGTTTTTTAAAAAAAA
ACTTCATCACTTGTTTGTTATCTCTAAGAGACTCTGAGCCAAGTGATCCTTTTATCCTGC
TACAGTCTATAAAGAACTTAAAAAAACAAGGGCCGCCAAAACTTAAATCACTCTCGATTT
CCTCTTTCATTTTCTAATGGCTCATGTTTTAAAATATATATATATGTATCTATTCTGTTT
CTTGGATAAAATTTTACCAAGGATCAAAAAAAAAAAAAAAGAAATTCTAGAATTTAAATG
GCGAGATCTCTATATCACAGTGACTTTCTTCTCAAACTGACATGTTTAGGTTTTAAGCAA
ATAAAGTACCAG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               283-552, gnl|bosTau2|chr11 (5206377-5206089)
               

               
               283-552, gnl|Hg17|chr1 (202418332-202418088)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               283-552, gnl|bosTau2|chr11 (5206377-5206089)
               

               
               283-552, gnl|Hg17|chr1 (202418332-202418088)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	283-552, gnl\|bosTau2\|chr11 (5206377-5206089)
	283-552, gnl\|Hg17\|chr1 (202418332-202418088)

	mgp (0.230681)
	spc (0.226732)
	sag (0.182715)
	gul (0.177588)
	isp (0.150376)
	bfe (0.149858)
	kid (0.129735)
	sug (0.127291)
	bla (0.124347)
	med (0.116252)
	ecc (0.115035)