Ss1.1-rspc034_k20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGTCGGTGCTGAGGTGGCTTCGTTCTTCTGCTAGTGAGCCTCGCGGATGTAGAGTTCCG CGTCTAAGTCCTGCTGTCTGCGGCTACCAATTGGGAGGTCAGGAGCGCAGGGTACTTTCT TTGGGCCAGAGCCGGCCCCCTTTTTTGCCTTCGCCACTAAGTGAAGCCATTTAGGTCAGC TTCCGCGCGGCTGAGGAGAAGGCCGCCGGCGATATGTTCAAAAACACGTTCCAGAGCGGC TTCCTCTCCATTCTCTACAGCATTGGCAGCAAGCCCCTGCAAATCTGGGACAAAAAGGTG AGGAATGGCCACATCAAAAGAATCACTGATAATGACATCCAGTCCCTGGTGCTAGAGATT GAAGGAACAAACGTCAGCACCACATATATCACATGTCCTGCAGACCCAAAGAAAACATTG GGAATTAAACTTCCCTTCCTTGTCATGATTATCAAAAACCTGAAGAAATATTTTACCTTT GAAGTGCAGGTACTAGATGACAAGAATGTGCGTCGACGGTTTCGGGCAAGTAACTACCAG AGCACCACCCGGGTCAAACCCTTCATCTGTACCATGCCCATGCGGCTAGATGATGGCTGG AACCAAATTCAGTTCAACCTGTCAGACTTTACTCGTCGGGCATATGGCACAAATTACATT GAGACCCTAAGGGTGCAGATCCATGCAAACTGTCGCATCCGACGGGTTTACTTCTCAGAC AGACTCTACTCAGAAGACGAACTGCCAGCAGAGTTCAAACTGTATCTTCCAGTTCAGAAC AAAGCTAAGCAATAACTGAAATGCAACTAAAGGAATAGATCCTGGATATGACTCTTAGTT TAAAGGAAAACTATCTGGAGGACAATGCAAAAAACATATATTTATCTTAGTTCACCGTAC TGTGGTTCTTTTATCTTCTACTTCGCATCCCTTGTCATGGACACCAGTGACCGTGCCGTA ATGCCATAATTGCATTGTAAGTACAGTGGAAGATAAACCGTCCTTTGATACATGAATGCT GGAGTTTATCTTGCTGCCTGCCTCAGTGTGTGGGGAGGTACATTTACCATGAACTTAGAG AATTAAGGATGTCCTAGAAGGCAATTTCAGACCAATATTTCTTCCTACAGTTCTTTGTTT TATATATTATCTAAATATATGTATATGCTGTGTAATACTCATAATCCGGAAATGAATAAA ATGTTATATTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGTCGGTGCTGAGGTGGCTTCGTTCTTCTGCTAGTGAGCCTCGCGGATGTAGAGTTCCG CGTCTAAGTCCTGCTGTCTGCGGCTACCAATTGGGAGGTCAGGAGCGCAGGGTACTTTCT TTGGGCCAGAGCCGGCCCCCTTTTTTGCCTTCGCCACTAAGTGAAGCCATTTAGGTCAGC TTCCGCGCGGCTGAGGAGAAGGCCGCCGGCGATATGTTCAAAAACACGTTCCAGAGCGGC TTCCTCTCCATTCTCTACAGCATTGGCAGCAAGCCCCTGCAAATCTGGGACAAAAAGGTG AGGAATGGCCACATCAAAAGAATCACTGATAATGACATCCAGTCCCTGGTGCTAGAGATT GAAGGAACAAACGTCAGCACCACATATATCACATGTCCTGCAGACCCAAAGAAAACATTG GGAATTAAACTTCCCTTCCTTGTCATGATTATCAAAAACCTGAAGAAATATTTTACCTTT GAAGTGCAGGTACTAGATGACAAGAATGTGCGTCGACGGTTTCGGGCAAGTAACTACCAG AGCACCACCCGGGTCAAACCCTTCATCTGTACCATGCCCATGCGGCTAGATGATGGCTGG AACCAAATTCAGTTCAACCTGTCAGACTTTACTCGTCGGGCATATGGCACAAATTACATT GAGACCCTAAGGGTGCAGATCCATGCAAACTGTCGCATCCGACGGGTTTACTTCTCAGAC AGACTCTACTCAGAAGACGAACTGCCAGCAGAGTTCAAACTGTATCTTCCAGTTCAGAAC AAAGCTAAGCAATAACTGAAATGCAACTAAAGGAATAGATCCTGGATATGACTCTTAGTT TAAAGGAAAACTATCTGGAGGACAATGCAAAAAACATATATTTATCTTAGTTCACCGTAC TGTGGTTCTTTTATCTTCTACTTCGCATCCCTTGTCATGGACACCAGTGACCGTGCCGTA ATGCCATAATTGCATTGTAAGTACAGTGGAAGATAAACCGTCCTTTGATACATGAATGCT GGAGTTTATCTTGCTGCCTGCCTCAGTGTGTGGGGAGGTACATTTACCATGAACTTAGAG AATTAAGGATGTCCTAGAAGGCAATTTCAGACCAATATTTCTTCCTACAGTTCTTTGTTT TATATATTATCTAAATATATGTATATGCTGTGTAATACTCATAATCCGGAAATGAATAAA ATGTTATATTCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 4-303, gnl|bosTau2|chr18 (22946794-22946499) | |
| 4-303, gnl|Hg17|chr16 (56720738-56720431) | |
| 4-303, gnl|Mm7|chr8 (94023827-94023552) | |
| 488-678, gnl|bosTau2|chr18 (22935385-22935195) | |
| 488-678, gnl|canFam2|chr2 (61337772-61337559) | |
| 488-678, gnl|danRer3|chrUn (17724862-17725083) | |
| 488-678, gnl|dasNov1|scaffold_25367 (6088-5866) | |
| 488-678, gnl|echTel1|scaffold_192191 (4472-4695) | |
| 488-678, gnl|fr1|chrUn (189260441-189260657) | |
| 488-678, gnl|galGal2|chr11 (412524-412328) | |
| 488-678, gnl|hg17|chr16 (56706672-56706897) | |
| 488-678, gnl|Hg17|chr16 (56706864-56706674) | |
| 488-678, gnl|mm7|chr8 (94011125-94011347) | |
| 488-678, gnl|Mm7|chr8 (94011317-94011127) | |
| 488-678, gnl|monDom2|scaffold_63 (7766959-7767200) | |
| 488-678, gnl|oryCun1|scaffold_184014 (703-476) | |
| 488-678, gnl|panTro1|chr18 (50827640-50827865) | |
| 488-678, gnl|rheMac2|chr20 (56476655-56476887) | |
| 488-678, gnl|rn3|chr19 (10084610-10084394) | |
| 488-678, gnl|tetNig1|chr21_random (2043945-2044140) | |
| 788-1212, gnl|bosTau2|chr18 (22933994-22933575) | |
| 788-1212, gnl|canFam2|chr2 (61339182-61338657) | |
| 788-1212, gnl|dasNov1|scaffold_25367 (7493-6968) | |
| 788-1212, gnl|echTel1|scaffold_192191 (3339-3838) | |
| 788-1212, gnl|galGal2|chr11 (414748-414218) | |
| 788-1212, gnl|hg17|chr16 (56704970-56705488) | |
| 788-1212, gnl|Hg17|chr16 (56705437-56705008) | |
| 788-1212, gnl|mm7|chr8 (94009296-94009791) | |
| 788-1212, gnl|Mm7|chr8 (94009740-94009329) | |
| 788-1212, gnl|monDom2|scaffold_63 (7765209-7765701) | |
| 788-1212, gnl|oryCun1|scaffold_184014 (2166-1688) | |
| 788-1212, gnl|panTro1|chr18 (50825931-50826448) | |
| 788-1212, gnl|rheMac2|chr20 (56474940-56475457) | |
| 788-1212, gnl|rn3|chr19 (10086303-10085821) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-303, gnl|bosTau2|chr18 (22946794-22946499) | |
| 4-303, gnl|Hg17|chr16 (56720738-56720431) | |
| 4-303, gnl|Mm7|chr8 (94023827-94023552) | |
| 488-678, gnl|bosTau2|chr18 (22935385-22935195) | |
| 488-678, gnl|canFam2|chr2 (61337772-61337559) | |
| 488-678, gnl|danRer3|chrUn (17724862-17725083) | |
| 488-678, gnl|dasNov1|scaffold_25367 (6088-5866) | |
| 488-678, gnl|echTel1|scaffold_192191 (4472-4695) | |
| 488-678, gnl|fr1|chrUn (189260441-189260657) | |
| 488-678, gnl|galGal2|chr11 (412524-412328) | |
| 488-678, gnl|hg17|chr16 (56706672-56706897) | |
| 488-678, gnl|Hg17|chr16 (56706864-56706674) | |
| 488-678, gnl|mm7|chr8 (94011125-94011347) | |
| 488-678, gnl|Mm7|chr8 (94011317-94011127) | |
| 488-678, gnl|monDom2|scaffold_63 (7766959-7767200) | |
| 488-678, gnl|oryCun1|scaffold_184014 (703-476) | |
| 488-678, gnl|panTro1|chr18 (50827640-50827865) | |
| 488-678, gnl|rheMac2|chr20 (56476655-56476887) | |
| 488-678, gnl|rn3|chr19 (10084610-10084394) | |
| 488-678, gnl|tetNig1|chr21_random (2043945-2044140) | |
| 788-1212, gnl|bosTau2|chr18 (22933994-22933575) | |
| 788-1212, gnl|canFam2|chr2 (61339182-61338657) | |
| 788-1212, gnl|dasNov1|scaffold_25367 (7493-6968) | |
| 788-1212, gnl|echTel1|scaffold_192191 (3339-3838) | |
| 788-1212, gnl|galGal2|chr11 (414748-414218) | |
| 788-1212, gnl|hg17|chr16 (56704970-56705488) | |
| 788-1212, gnl|Hg17|chr16 (56705437-56705008) | |
| 788-1212, gnl|mm7|chr8 (94009296-94009791) | |
| 788-1212, gnl|Mm7|chr8 (94009740-94009329) | |
| 788-1212, gnl|monDom2|scaffold_63 (7765209-7765701) | |
| 788-1212, gnl|oryCun1|scaffold_184014 (2166-1688) | |
| 788-1212, gnl|panTro1|chr18 (50825931-50826448) | |
| 788-1212, gnl|rheMac2|chr20 (56474940-56475457) | |
| 788-1212, gnl|rn3|chr19 (10086303-10085821) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| aor (0.781097) | |
| cbe (0.717703) | |
| fco (0.628832) | |
| spc (0.566829) | |
| kid (0.518941) | |
| fcc (0.39557) | |
| bla (0.373042) | |
| cmu (0.372787) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| tes (0.207814) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| mga (0.160205) | |
| cag (0.151194) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.781097) | |
| cbe (0.717703) | |
| fco (0.628832) | |
| spc (0.566829) | |
| kid (0.518941) | |
| fcc (0.39557) | |
| bla (0.373042) | |
| cmu (0.372787) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| tes (0.207814) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| mga (0.160205) | |
| cag (0.151194) | |
| lun (0.150489) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| eje (0.0988338) |