Non-Coding RNA Search

Ss1.1-rspc034_m14.5

Sequence:


               
               GGCTTCACTTTATATCATGATGACCCTTACCAACTGGTACAGGTATGAGCCTTCTCGTGA
GATGAAAAGTCAGTGGACAGCTGTCTGGGTGAAAATATCTTCTAGTTGGATTGGCATTGT
GCTGTATGTTTGGACACTGGTGGCACCACTTGTTCTTACAAATCGTGATTTTGACTGAAG
GAGACTTCTGGCATGAAAGTCTCACTTTGATCATCACTTATTTGGAATTAACAGTATTCC
CAATTTTTGTAAAGTTGTGTATGTGTGTGCTTCCCATGTAACTTCTCCAGTGGTCTGGCA
TGAATTAGATTTTACCGCTTGCCATTTTTATTCATTAGTCTCGCCAAGTGCATTGATATG
TGTGTTAGAATGAGTCACTGACAGTTTAATTCTTTAAGTTTTATTAGGACTTAAGCTGTT
TTAGAAAAATATAAAAAGAAGTGTATGGCTGCCTTTTGAAATATTTGATGCCTTGTGCTA
TAGGAGACTGCAAAGAACATGGCTATTTTAAAATTGTATAAAGATGTATACACATGTCAC
TTAAAGGCCAGTTTCCTAAAAAATCTTTTCAGGTTTTTCCCTGATATGAAGGTAAGGAAA
TAGGTATAGAGTGTCTGATTGACAACAGTGCAAGTTAATAATGGGGATTGAGACAGAGGG
CTTTCAAAGAAAGTCAGATTGCTGGTGGGGGGGTGGGTACTAAATTGAATACCCAAGTAG
GTTGTAAGTTCTGGGGTAGGGATAGCCTTCCATACCAACACAGTGAACTTTGTTTGGGTC
ATTGTAAACACAGGCAGATGTGTTCAGTGAGTTCAGTGGAGATGTTAGGAACTATAAAGG
ATTTGGACAAAGGTTTTGAAAAGGGTAATCATGGGTTAGAAAGAGGTGATTGAACATCAT
TTCAAAAGTTTTGAAAATCAGGGGTGGTAAACTTTTGACAGGACAGGAAGAAACTGCTTC
AGTAGACAGAATCTAGTCCAGTCTTCTAATTTTAAAAATGAAGAAACTAAAGTACAGATT
CAGATAGCTAAGAGAGCTAATCAGCAGCAAAGCTGGGAAATCCCAAGTCCATCAAAAGTA
ACTGGCATTCTTTTTGGCATTCAAACATAATTTCTATTCAGGAGTTCCCTTGTGACACAG
TGGTTAAGGATCTGGTATCATCAGTGCTATGACTCAGGTCATTGGCGTGTTGTTGGTTCA
ATTCCTGGCCCAGAAACTTCCACATGCCGCAGGTGCGGCCAAAAAGGAAATTCACATGCA
TAACAGATTTTACACCTTGTAAGTGGTGGATAATTTGTGACAGATTGCTGGTGTCCAGCA
TGCCTTCTATACATAAACTGAGGCCAGGAGAATGATGGCTGCTGTAGAATAAACTCCTGC
TTATAGTACACTATACAGTTCAAAAGATGTTTGTATTTGCTACCATCTAATTGAAATATA
TAGGTTATTATATACTCTTTCAATCTGGAAATCAAGCAGTATGACTGTTAACTTAGAAAA
CTCTTAGTTACTTGTGTCATTAGTGTCTTAATGAATCTTAAAATCTACATTTGCTTCTTT
TAAGATATTCATGTAAATGAAATATAACAAATTGAATTCCCCAACTTTATTCTGTATGTT
GATAATTGGTTCCATAATTTTGAATGGCTGTGTTCTATCTTTAAATAAAGAATTCAGAGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTCACTTTATATCATGATGACCCTTACCAACTGGTACAGGTATGAGCCTTCTCGTGA
GATGAAAAGTCAGTGGACAGCTGTCTGGGTGAAAATATCTTCTAGTTGGATTGGCATTGT
GCTGTATGTTTGGACACTGGTGGCACCACTTGTTCTTACAAATCGTGATTTTGACTGAAG
GAGACTTCTGGCATGAAAGTCTCACTTTGATCATCACTTATTTGGAATTAACAGTATTCC
CAATTTTTGTAAAGTTGTGTATGTGTGTGCTTCCCATGTAACTTCTCCAGTGGTCTGGCA
TGAATTAGATTTTACCGCTTGCCATTTTTATTCATTAGTCTCGCCAAGTGCATTGATATG
TGTGTTAGAATGAGTCACTGACAGTTTAATTCTTTAAGTTTTATTAGGACTTAAGCTGTT
TTAGAAAAATATAAAAAGAAGTGTATGGCTGCCTTTTGAAATATTTGATGCCTTGTGCTA
TAGGAGACTGCAAAGAACATGGCTATTTTAAAATTGTATAAAGATGTATACACATGTCAC
TTAAAGGCCAGTTTCCTAAAAAATCTTTTCAGGTTTTTCCCTGATATGAAGGTAAGGAAA
TAGGTATAGAGTGTCTGATTGACAACAGTGCAAGTTAATAATGGGGATTGAGACAGAGGG
CTTTCAAAGAAAGTCAGATTGCTGGTGGGGGGGTGGGTACTAAATTGAATACCCAAGTAG
GTTGTAAGTTCTGGGGTAGGGATAGCCTTCCATACCAACACAGTGAACTTTGTTTGGGTC
ATTGTAAACACAGGCAGATGTGTTCAGTGAGTTCAGTGGAGATGTTAGGAACTATAAAGG
ATTTGGACAAAGGTTTTGAAAAGGGTAATCATGGGTTAGAAAGAGGTGATTGAACATCAT
TTCAAAAGTTTTGAAAATCAGGGGTGGTAAACTTTTGACAGGACAGGAAGAAACTGCTTC
AGTAGACAGAATCTAGTCCAGTCTTCTAATTTTAAAAATGAAGAAACTAAAGTACAGATT
CAGATAGCTAAGAGAGCTAATCAGCAGCAAAGCTGGGAAATCCCAAGTCCATCAAAAGTA
ACTGGCATTCTTTTTGGCATTCAAACATAATTTCTATTCAGGAGTTCCCTTGTGACACAG
TGGTTAAGGATCTGGTATCATCAGTGCTATGACTCAGGTCATTGGCGTGTTGTTGGTTCA
ATTCCTGGCCCAGAAACTTCCACATGCCGCAGGTGCGGCCAAAAAGGAAATTCACATGCA
TAACAGATTTTACACCTTGTAAGTGGTGGATAATTTGTGACAGATTGCTGGTGTCCAGCA
TGCCTTCTATACATAAACTGAGGCCAGGAGAATGATGGCTGCTGTAGAATAAACTCCTGC
TTATAGTACACTATACAGTTCAAAAGATGTTTGTATTTGCTACCATCTAATTGAAATATA
TAGGTTATTATATACTCTTTCAATCTGGAAATCAAGCAGTATGACTGTTAACTTAGAAAA
CTCTTAGTTACTTGTGTCATTAGTGTCTTAATGAATCTTAAAATCTACATTTGCTTCTTT
TAAGATATTCATGTAAATGAAATATAACAAATTGAATTCCCCAACTTTATTCTGTATGTT
GATAATTGGTTCCATAATTTTGAATGGCTGTGTTCTATCTTTAAATAAAGAATTCAGAGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|16877688|gb|AAH17085.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16877688|gb|AAH17085.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               154-273, + strand, RNAz p=0.816107
               

               
               1292-1406, - strand, RNAz p=0.742551

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-273, + strand, RNAz p=0.816107
               

               
               1292-1406, - strand, RNAz p=0.742551

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-377, gnl|bosTau2|chr9 (11072664-11073040)
               

               
               1-377, gnl|Hg17|chr6 (122809659-122807689)
               

               
               1-377, gnl|Mm7|chr10 (57337260-57334826)
               


               
               961-1120, gnl|bosTau2|chr20 (12764262-12764108)
               

               
               961-1120, gnl|Hg17|chr6 (122806770-122806633)
               


               
               1254-1692, gnl|bosTau2|chr20 (12764064-12763615)
               

               
               1254-1692, gnl|Hg17|chr6 (122806628-122806194)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-377, gnl|bosTau2|chr9 (11072664-11073040)
               

               
               1-377, gnl|Hg17|chr6 (122809659-122807689)
               

               
               1-377, gnl|Mm7|chr10 (57337260-57334826)
               


               
               961-1120, gnl|bosTau2|chr20 (12764262-12764108)
               

               
               961-1120, gnl|Hg17|chr6 (122806770-122806633)
               


               
               1254-1692, gnl|bosTau2|chr20 (12764064-12763615)
               

               
               1254-1692, gnl|Hg17|chr6 (122806628-122806194)

Expressed library(ies): 49 entry(ies)

More info

Expressed library(ies): 49 entry(ies)

Help | Less info


               
               spc (2.38068)
               

               
               gul (1.42071)
               

               
               sag (1.09629)
               

               
               cbe (0.956938)
               

               
               fce (0.814775)
               

               
               lyg (0.798616)
               

               
               ret (0.7724)
               

               
               hea (0.613497)
               

               
               sme (0.610874)
               

               
               bfe (0.599431)
               

               
               ski (0.586941)
               

               
               lin (0.582411)
               

               
               fbs (0.526039)
               

               
               fhi (0.508733)
               

               
               bla (0.497389)
               

               
               tra (0.492368)
               

               
               ldo (0.485013)
               

               
               fco (0.471624)
               

               
               mas (0.42061)
               

               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               sug (0.381874)
               

               
               mgm (0.360685)
               

               
               pgl (0.35545)
               

               
               mga (0.32041)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               ssp (0.271039)
               

               
               thg (0.253582)
               

               
               ese (0.253004)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               eje (0.197668)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 49 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (2.38068)
               

               
               gul (1.42071)
               

               
               sag (1.09629)
               

               
               cbe (0.956938)
               

               
               fce (0.814775)
               

               
               lyg (0.798616)
               

               
               ret (0.7724)
               

               
               hea (0.613497)
               

               
               sme (0.610874)
               

               
               bfe (0.599431)
               

               
               ski (0.586941)
               

               
               lin (0.582411)
               

               
               fbs (0.526039)
               

               
               fhi (0.508733)
               

               
               bla (0.497389)
               

               
               tra (0.492368)
               

               
               ldo (0.485013)
               

               
               fco (0.471624)
               

               
               mas (0.42061)
               

               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               sug (0.381874)
               

               
               mgm (0.360685)
               

               
               pgl (0.35545)
               

               
               mga (0.32041)
               

               
               lun (0.300978)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               ssp (0.271039)
               

               
               thg (0.253582)
               

               
               ese (0.253004)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               eje (0.197668)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	154-273, + strand, RNAz p=0.816107
	1292-1406, - strand, RNAz p=0.742551

	1-377, gnl\|bosTau2\|chr9 (11072664-11073040)
	1-377, gnl\|Hg17\|chr6 (122809659-122807689)
	1-377, gnl\|Mm7\|chr10 (57337260-57334826)

	961-1120, gnl\|bosTau2\|chr20 (12764262-12764108)
	961-1120, gnl\|Hg17\|chr6 (122806770-122806633)

	1254-1692, gnl\|bosTau2\|chr20 (12764064-12763615)
	1254-1692, gnl\|Hg17\|chr6 (122806628-122806194)

	spc (2.38068)
	gul (1.42071)
	sag (1.09629)
	cbe (0.956938)
	fce (0.814775)
	lyg (0.798616)
	ret (0.7724)
	hea (0.613497)
	sme (0.610874)
	bfe (0.599431)
	ski (0.586941)
	lin (0.582411)
	fbs (0.526039)
	fhi (0.508733)
	bla (0.497389)
	tra (0.492368)
	ldo (0.485013)
	fco (0.471624)
	mas (0.42061)
	fcc (0.39557)
	aor (0.390549)
	kid (0.389206)
	sug (0.381874)
	mgm (0.360685)
	pgl (0.35545)
	mga (0.32041)
	lun (0.300978)
	fat (0.294855)
	liv (0.292569)
	ssp (0.271039)
	thg (0.253582)
	ese (0.253004)
	mgp (0.230681)
	ece (0.229305)
	eje (0.197668)
	rec (0.17307)
	mcp (0.170648)
	nco (0.161734)
	tbr (0.154178)
	spl (0.143184)
	ste (0.135208)
	pla (0.133672)
	ute (0.132784)
	ova (0.129132)
	ebs (0.118301)
	cbl (0.114797)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)