Non-Coding RNA Search

Ss1.1-rspc035_a12.5

Sequence:


               
               CAGAATTCTTTGAGGTACTAGGTAGTGCTTTGTAGACACAAGCTGCTCATTTGCATCTTG
CTGTGTTCTGTTTGCTAAGGTTGGGGTCATTCATTTAACACATACTGACGATTATGAAAG
GCACCATGGAGAGTTAGTCATGGAATAAAAGCACATCCTCCCTGACGGAAACGTTCCTCT
GGAGCCAGCTTCCGGCAGGAAGGGTTTAGAAGATGTAGCATTGAGGCATGTGAAGAGATT
GTGCCCTCACTTCCACTTGTGTTTTTGGTTATTCACTTGTAATGAAAGGTTGGCAGTGAT
GTGGTACAACCTGCAAATTATTTTCAGTTCTGAGTTTCAGATAAAACATTTTAAGACAAA
AATCAGTACATACTGCTCCTTTGAAATTTGGGTAAAAAATTATACAACCGTATATATAGT
CATTTTTATATTTTTTCTATGTTGTGAAAACCAAAATTGTAATTTTATAAGTCTTTGATT
CACTAAAATTATATAATTTAAATGTATTTTTTGTATATTTAGAAATAAGGAGTTCAAAGA
CTATGCTTAACTTTCTATGCATGCATTTGGAAGCTGTTTTTACCTGATAATGTTAACGTA
GTAATAAGTTGTATTCATAAAATACTGATCTGTGTTGCATTTCAAAATAAACTGGTATGT
GCTCTGCCTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAATTCTTTGAGGTACTAGGTAGTGCTTTGTAGACACAAGCTGCTCATTTGCATCTTG
CTGTGTTCTGTTTGCTAAGGTTGGGGTCATTCATTTAACACATACTGACGATTATGAAAG
GCACCATGGAGAGTTAGTCATGGAATAAAAGCACATCCTCCCTGACGGAAACGTTCCTCT
GGAGCCAGCTTCCGGCAGGAAGGGTTTAGAAGATGTAGCATTGAGGCATGTGAAGAGATT
GTGCCCTCACTTCCACTTGTGTTTTTGGTTATTCACTTGTAATGAAAGGTTGGCAGTGAT
GTGGTACAACCTGCAAATTATTTTCAGTTCTGAGTTTCAGATAAAACATTTTAAGACAAA
AATCAGTACATACTGCTCCTTTGAAATTTGGGTAAAAAATTATACAACCGTATATATAGT
CATTTTTATATTTTTTCTATGTTGTGAAAACCAAAATTGTAATTTTATAAGTCTTTGATT
CACTAAAATTATATAATTTAAATGTATTTTTTGTATATTTAGAAATAAGGAGTTCAAAGA
CTATGCTTAACTTTCTATGCATGCATTTGGAAGCTGTTTTTACCTGATAATGTTAACGTA
GTAATAAGTTGTATTCATAAAATACTGATCTGTGTTGCATTTCAAAATAAACTGGTATGT
GCTCTGCCTGGA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-672, gnl|bosTau2|chr1 (41841046-41841707)
               

               
               2-672, gnl|Hg17|chr3 (124693769-124693098)
               

               
               2-672, gnl|Mm7|chr16 (34783318-34783947)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-672, gnl|bosTau2|chr1 (41841046-41841707)
               

               
               2-672, gnl|Hg17|chr3 (124693769-124693098)
               

               
               2-672, gnl|Mm7|chr16 (34783318-34783947)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               ski (0.733676)
               

               
               fat (0.442282)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               lyg (0.266205)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               mga (0.160205)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.733676)
               

               
               fat (0.442282)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               lyg (0.266205)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               mga (0.160205)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

	2-672, gnl\|bosTau2\|chr1 (41841046-41841707)
	2-672, gnl\|Hg17\|chr3 (124693769-124693098)
	2-672, gnl\|Mm7\|chr16 (34783318-34783947)

	ski (0.733676)
	fat (0.442282)
	vin (0.332557)
	fco (0.314416)
	cte (0.29274)
	lyg (0.266205)
	spc (0.226732)
	fcc (0.197785)
	cmu (0.186393)
	mga (0.160205)
	csk (0.140746)
	kid (0.129735)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)