Non-Coding RNA Search

Ss1.1-rspc035_c4.5

Sequence:


               
               GGAAAGTGTGAAAGGTGGCTCTTTGTTGGAGTAACATAATGACATAGTGTTTTCTAATCA
TGTTTTTCATGTCTGGGCAGTAGACAGGTCTCTTAGGACAGAAGTAATCAAACCTCATGT
GAAGTGTGGGAAAATTCTTGCCCCTTTAGACTGATGGAGGGCTCAGTTCAATCAGCTGCA
TCAAGAGAATCCTATAAAGTAAGCTGGATAATGACATTTCAACTATCAATATAATATAGT
AAGAAGCAAAACGATTTAAGGCAAAAAGAAAATCACTGAAATAAATGTCGCAAAATCTTA
ATCAGTGCTTTTACCTTGCCAGTTGTATAAACCTCTTAGCCTCCCTTCCTGCCTGCTTAT
ATGAAATGTACAGTACTTGCTCTGGCTCCCTCATAGGGCTCTTCTTGCTGGAATCCTAGG
AGACAATATATGTGGAAGATAATCTGAGTGAGAATGCTTTGAAAAACTATAAAGCATTAC
ATAAATGTAAGATAATATTATCCATCTGTAAACAGATATCTCTGTGTATTTTACATGTGT
ATCCATGTATTCTGTAATTCAAGATTAAACAAAACTGCTATCCGTTGTGAAAGGAAAACA
GTAATTTCATTAATCAGTATTTTGCTTGTATTTTTTTAATAATCATTAATTCTTGAATGA
CACTTTACCTCAATTATTATACGTAACTGAAAATGTTAATTGACTTTAAACCAACTTCAA
ATGTAGAACTGAACACTGAAACTGTGATTTTCTTATATGTTGACACAAATAAAGGCTTAT
AATTAATTAGTAATTGTAAAATAGGAACAACACCTTGATTGATGACATTGTTCTTTTTCT
ACATTCTTTTGATTTACAATTTATAAACATCAAGTGTAAGCCTTATATCTAAGCCTCTTT
TTCTCAGGCTCTAAACAGTGCAATACTATAATCTTTTTCTGTTTGAAAATAAAATCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGTGTGAAAGGTGGCTCTTTGTTGGAGTAACATAATGACATAGTGTTTTCTAATCA
TGTTTTTCATGTCTGGGCAGTAGACAGGTCTCTTAGGACAGAAGTAATCAAACCTCATGT
GAAGTGTGGGAAAATTCTTGCCCCTTTAGACTGATGGAGGGCTCAGTTCAATCAGCTGCA
TCAAGAGAATCCTATAAAGTAAGCTGGATAATGACATTTCAACTATCAATATAATATAGT
AAGAAGCAAAACGATTTAAGGCAAAAAGAAAATCACTGAAATAAATGTCGCAAAATCTTA
ATCAGTGCTTTTACCTTGCCAGTTGTATAAACCTCTTAGCCTCCCTTCCTGCCTGCTTAT
ATGAAATGTACAGTACTTGCTCTGGCTCCCTCATAGGGCTCTTCTTGCTGGAATCCTAGG
AGACAATATATGTGGAAGATAATCTGAGTGAGAATGCTTTGAAAAACTATAAAGCATTAC
ATAAATGTAAGATAATATTATCCATCTGTAAACAGATATCTCTGTGTATTTTACATGTGT
ATCCATGTATTCTGTAATTCAAGATTAAACAAAACTGCTATCCGTTGTGAAAGGAAAACA
GTAATTTCATTAATCAGTATTTTGCTTGTATTTTTTTAATAATCATTAATTCTTGAATGA
CACTTTACCTCAATTATTATACGTAACTGAAAATGTTAATTGACTTTAAACCAACTTCAA
ATGTAGAACTGAACACTGAAACTGTGATTTTCTTATATGTTGACACAAATAAAGGCTTAT
AATTAATTAGTAATTGTAAAATAGGAACAACACCTTGATTGATGACATTGTTCTTTTTCT
ACATTCTTTTGATTTACAATTTATAAACATCAAGTGTAAGCCTTATATCTAAGCCTCTTT
TTCTCAGGCTCTAAACAGTGCAATACTATAATCTTTTTCTGTTTGAAAATAAAATCAGCT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-933, gnl|bosTau2|chr21 (47540636-47541571)
               

               
               1-933, gnl|Hg17|chr1 (170558741-170560229)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-933, gnl|bosTau2|chr21 (47540636-47541571)
               

               
               1-933, gnl|Hg17|chr1 (170558741-170560229)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               lyg (0.266205)
               

               
               mgp (0.230681)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.266205)
               

               
               mgp (0.230681)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-933, gnl\|bosTau2\|chr21 (47540636-47541571)
	1-933, gnl\|Hg17\|chr1 (170558741-170560229)

	lyg (0.266205)
	mgp (0.230681)
	isp (0.150376)
	bfe (0.149858)
	lin (0.145603)
	ute (0.132784)
	kid (0.129735)
	tra (0.123092)
	spc (0.113366)