Non-Coding RNA Search

Ss1.1-rspc035_e16.5

Sequence:


               
               ACCCGGACGACCCATCAAAGCGAGGAGCGGAGCGAACTTGCACTCGGGTCAGTAACAAGG
CGGCCCCCACTCTGCCCACAGTCTCCATCTCATCCAGTGCAGAAGCCTGAAGGGAGTCTG
CAGCATCAGACCCGCCTCCAGGAGAACTCTGAATTTGCAGCTAATCTCGGGGAAGAGAAA
GAGAAATTTAATTTATTTGATGTTTTTATGGTGTTAATACTTTTTTTACCTCGCTAGCTT
GAGAATTTTGCCAGCCTCCAGATTTGCACATTTCTGATCTCTTTTTTTTTTTTTTTTTTT
TCCTTTGATTGAGCGGCGTCGATCAAGCCCGGCTAAATATTTGCTATGAAATCCCAGTGA
ATGTGTAGCTCGAAAGCAAACCGTTCAGTTTGCTGCTGGTTACAGTTATGTTCCATACCC
AGTCCTCGTACACATATTTTAAAGGTCAAAGTGAATGTTTTTGTAACATGTAAGCATATT
TCGAATGTAAATAGAAGATTGTAAAATATATGGTTTTTACCAAATTTAAAAGAACGTTTT
TAGTTAATATTGATGACAGTGCTAAAATTATATGAATAACATTTCAGATACCATTATATT
AAAATATTTGTGTATGTGTACAAAAGTGTTGATAAATACTAATCTTTAAAGTTTGTGGAG
TTTCTTTATTTGTAATATATGTGCTCTTAAAAGCAGTGAGATGTGAAATTATGGAAGCCT
TTTGTGGTTAATAGAAATAAAAATACCATTAATTTGCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCGGACGACCCATCAAAGCGAGGAGCGGAGCGAACTTGCACTCGGGTCAGTAACAAGG
CGGCCCCCACTCTGCCCACAGTCTCCATCTCATCCAGTGCAGAAGCCTGAAGGGAGTCTG
CAGCATCAGACCCGCCTCCAGGAGAACTCTGAATTTGCAGCTAATCTCGGGGAAGAGAAA
GAGAAATTTAATTTATTTGATGTTTTTATGGTGTTAATACTTTTTTTACCTCGCTAGCTT
GAGAATTTTGCCAGCCTCCAGATTTGCACATTTCTGATCTCTTTTTTTTTTTTTTTTTTT
TCCTTTGATTGAGCGGCGTCGATCAAGCCCGGCTAAATATTTGCTATGAAATCCCAGTGA
ATGTGTAGCTCGAAAGCAAACCGTTCAGTTTGCTGCTGGTTACAGTTATGTTCCATACCC
AGTCCTCGTACACATATTTTAAAGGTCAAAGTGAATGTTTTTGTAACATGTAAGCATATT
TCGAATGTAAATAGAAGATTGTAAAATATATGGTTTTTACCAAATTTAAAAGAACGTTTT
TAGTTAATATTGATGACAGTGCTAAAATTATATGAATAACATTTCAGATACCATTATATT
AAAATATTTGTGTATGTGTACAAAAGTGTTGATAAATACTAATCTTTAAAGTTTGTGGAG
TTTCTTTATTTGTAATATATGTGCTCTTAAAAGCAGTGAGATGTGAAATTATGGAAGCCT
TTTGTGGTTAATAGAAATAAAAATACCATTAATTTGCAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-758, gnl|bosTau2|chr2 (67527011-67527757)
               

               
               1-758, gnl|Hg17|chr2 (225456052-225455312)
               

               
               1-758, gnl|Mm7|chr1 (80716496-80715750)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-758, gnl|bosTau2|chr2 (67527011-67527757)
               

               
               1-758, gnl|Hg17|chr2 (225456052-225455312)
               

               
               1-758, gnl|Mm7|chr1 (80716496-80715750)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               spc (0.906927)
               

               
               thg (0.380373)
               

               
               ece (0.229305)
               

               
               sin (0.174948)
               

               
               pty (0.142714)
               

               
               tra (0.123092)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.906927)
               

               
               thg (0.380373)
               

               
               ece (0.229305)
               

               
               sin (0.174948)
               

               
               pty (0.142714)
               

               
               tra (0.123092)

	1-758, gnl\|bosTau2\|chr2 (67527011-67527757)
	1-758, gnl\|Hg17\|chr2 (225456052-225455312)
	1-758, gnl\|Mm7\|chr1 (80716496-80715750)

	spc (0.906927)
	thg (0.380373)
	ece (0.229305)
	sin (0.174948)
	pty (0.142714)
	tra (0.123092)