Ss1.1-rspc035_g4.5.5
|
CCGGGCCCCGTGCGTCTGTCCGCGCCCGGTGGATGTGAATCGGCGGCGGCGGCGGAGGAG
TCGGTGGGCCGGCGCCCAGCCTGTGGGAGCGCGGAGAATGAGGCCGCTGCCGGGCGCTCC
TGGCGTGGCGGCGGCCGCCGCGTTGTTGCTGCTGCTGTTGCCCCGGGCTCGGTCTGACGA
GCACGAACACACGTATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGTCC
CTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTTTGTGTGGGGTCAAA
AAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTA
GAATTTAGTGGCCTGGATATTAAATTTAAAGATGATGTGATGCCAGGTACTTACTGTGAA
ATGTACTTCATCTTCACGTCCTTCTGGGCATATAAGATCTACTATGTCTATGGTTTCATG
ATGCTGGTGCTGGTCATCCTGTGCATTGTGACTGTCTGTGTGACCATCGTCTGCACATAC
TTTCTACTAAATGCAGAGGATTATAGGTGGCAATGGACAAGTTTTCTCTCTGCTGCATCA
ACTGCAATTTATGTTTACATGTATTCCTTTTACTACTATTTTTTCAAAACAAAGATGTAT
GGCTTATTTCAAACATCATTTTACTTTGGATATATGGCGGTATTTAGCACAGCCTTGGGG
ATAATGTGTGGAGCAATTGGTTACATGGGAACAAGTGCCTTTGTCCGAAAAATCTATACT
AATGTGAAAATTGACTAAAGACCCACGAAAACCTGGAACTTCGGATCAATTTCTCTTTCA
CAGGGATGGAACTTGCACAGCAAAAAGAGCGCAAGAAGAGATTTGGGCTTTAACACTGGG
TACTTTGTGGGTCTCTCTTTCATGGATGGCTTAAAGTAACATCTATTTCCATTGATCCTA
GGTTCTTACTGACTGCTTTCTCCAACTGTTCACAGCAAATGCTTGGATTTTATGCAGTAG
GCATTGCTACAGTACATGGCTAATCTTCCCAAAAACTAGCTCATTAAAGATGAAATAGAC
CAGCTCTCTTCAGTGAAGAGGACAAATAGTTTATTTAAAGCATTTGTTCCAATAAAATAA
ATAGAGGGAAACTTGGATGCTAAAATTACACGAGTAGAAATCTTCCTGGCGCTAGTGTTT
CTATGTTATTGAAAAATGATGTTCCAGAAAGATTACTTTTTTCTCTTATTTTTACTGCCA
TCATCAACCTTTTGTGGGACATTTTTATATACTGAACCTGGGTTCTTTTTTGACCTACCT
TTTTTTTTTTTTTTTTTTCCCCAATTCAGTTGCATCCTTTTTTTTTTAAAGAGAGAATTT
AAAAATATTAAATCCTGCATGTAATATATCTGCTGTCATCTTAGTTGGACCAACTTCCCA
TTTATTTATCGTAAAACTATCCAGTTACATCTTAATTCCATCCAAAGAAGATACAGTCTG
AAGATAGAGGTGTACTCTCTACAATGCAGTTTACTGTACAGTTAGAAAGCAAAGTGTTAA
ATGGAGAAGATATTTGTTTTTATTAAACATTTTGAGATTTAGATAAACTACATTTTAACT
GAATGTCTAAAGTGATTATCTACCCCCTCCCCCCAAGTTAGTCTTACATCTTTTTTTGGG
GTTTGAATGAAGGTTTTACATAAGAAATTATTAAAAACAGGGGGTGGGTGATAAATGTAT
ATAACATTAAATAATGTAACGTAGGTGTAGATTCCCAAATGCATTTGGATGTACAGATTG
ATTACGGAATACTTTTTTCTGATGATGATGGGTGTAGAAACGTGTGAATTTGGGTGGCTT
TTTACATCTTGCCTACCACTGCATGAAACATTGGGGTTTCTTCAAAATGTGTGTGTCATG
CTTCTTTTGGGAGGGGGGATTGTTTTCTTCTGTTTTTTTTTTTGTTGTTGTTTGTTTTTT
TGTTTTTGGTTTTTTTCCTGAGACTCCTGCAGGAGCTAAATTTGTAATTTAGAAACATTT
AATTTTGTTAATCCTGTCTGGGGCACTTAAGTAACATCTAAAGCATTACTGCTTTAGAAT
GTTAAAATAAAATTTCCTGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCGGGCCCCGTGCGTCTGTCCGCGCCCGGTGGATGTGAATCGGCGGCGGCGGCGGAGGAG
TCGGTGGGCCGGCGCCCAGCCTGTGGGAGCGCGGAGAATGAGGCCGCTGCCGGGCGCTCC
TGGCGTGGCGGCGGCCGCCGCGTTGTTGCTGCTGCTGTTGCCCCGGGCTCGGTCTGACGA
GCACGAACACACGTATCAAGATAAAGAAGAAGTTGTTTTATGGATGAATACTGTTGGTCC
CTACCACAATCGCCAAGAAACATATAAATACTTTTCACTTCCATTTTGTGTGGGGTCAAA
AAAAAAAGTATCAGTCATTACCATGAAACTTTGGGAGAAGCACTTCAAGGAGTTGAATTA
GAATTTAGTGGCCTGGATATTAAATTTAAAGATGATGTGATGCCAGGTACTTACTGTGAA
ATGTACTTCATCTTCACGTCCTTCTGGGCATATAAGATCTACTATGTCTATGGTTTCATG
ATGCTGGTGCTGGTCATCCTGTGCATTGTGACTGTCTGTGTGACCATCGTCTGCACATAC
TTTCTACTAAATGCAGAGGATTATAGGTGGCAATGGACAAGTTTTCTCTCTGCTGCATCA
ACTGCAATTTATGTTTACATGTATTCCTTTTACTACTATTTTTTCAAAACAAAGATGTAT
GGCTTATTTCAAACATCATTTTACTTTGGATATATGGCGGTATTTAGCACAGCCTTGGGG
ATAATGTGTGGAGCAATTGGTTACATGGGAACAAGTGCCTTTGTCCGAAAAATCTATACT
AATGTGAAAATTGACTAAAGACCCACGAAAACCTGGAACTTCGGATCAATTTCTCTTTCA
CAGGGATGGAACTTGCACAGCAAAAAGAGCGCAAGAAGAGATTTGGGCTTTAACACTGGG
TACTTTGTGGGTCTCTCTTTCATGGATGGCTTAAAGTAACATCTATTTCCATTGATCCTA
GGTTCTTACTGACTGCTTTCTCCAACTGTTCACAGCAAATGCTTGGATTTTATGCAGTAG
GCATTGCTACAGTACATGGCTAATCTTCCCAAAAACTAGCTCATTAAAGATGAAATAGAC
CAGCTCTCTTCAGTGAAGAGGACAAATAGTTTATTTAAAGCATTTGTTCCAATAAAATAA
ATAGAGGGAAACTTGGATGCTAAAATTACACGAGTAGAAATCTTCCTGGCGCTAGTGTTT
CTATGTTATTGAAAAATGATGTTCCAGAAAGATTACTTTTTTCTCTTATTTTTACTGCCA
TCATCAACCTTTTGTGGGACATTTTTATATACTGAACCTGGGTTCTTTTTTGACCTACCT
TTTTTTTTTTTTTTTTTTCCCCAATTCAGTTGCATCCTTTTTTTTTTAAAGAGAGAATTT
AAAAATATTAAATCCTGCATGTAATATATCTGCTGTCATCTTAGTTGGACCAACTTCCCA
TTTATTTATCGTAAAACTATCCAGTTACATCTTAATTCCATCCAAAGAAGATACAGTCTG
AAGATAGAGGTGTACTCTCTACAATGCAGTTTACTGTACAGTTAGAAAGCAAAGTGTTAA
ATGGAGAAGATATTTGTTTTTATTAAACATTTTGAGATTTAGATAAACTACATTTTAACT
GAATGTCTAAAGTGATTATCTACCCCCTCCCCCCAAGTTAGTCTTACATCTTTTTTTGGG
GTTTGAATGAAGGTTTTACATAAGAAATTATTAAAAACAGGGGGTGGGTGATAAATGTAT
ATAACATTAAATAATGTAACGTAGGTGTAGATTCCCAAATGCATTTGGATGTACAGATTG
ATTACGGAATACTTTTTTCTGATGATGATGGGTGTAGAAACGTGTGAATTTGGGTGGCTT
TTTACATCTTGCCTACCACTGCATGAAACATTGGGGTTTCTTCAAAATGTGTGTGTCATG
CTTCTTTTGGGAGGGGGGATTGTTTTCTTCTGTTTTTTTTTTTGTTGTTGTTTGTTTTTT
TGTTTTTGGTTTTTTTCCTGAGACTCCTGCAGGAGCTAAATTTGTAATTTAGAAACATTT
AATTTTGTTAATCCTGTCTGGGGCACTTAAGTAACATCTAAAGCATTACTGCTTTAGAAT
GTTAAAATAAAATTTCCTGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
|
gi|22761548|dbj|BAC11629.1| |
Protein identifier
|
gi|22761548|dbj|BAC11629.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
193-391, gnl|bosTau2|chr26 (8038587-8038391) |
|
193-391, gnl|Hg17|chr10 (98326577-98326381) |
|
193-391, gnl|Mm7|chr19 (41150180-41149984) |
| |
|
730-1960, gnl|bosTau2|chr26 (7989089-7987869) |
|
730-1960, gnl|Hg17|chr10 (98272078-98270860) |
|
730-1960, gnl|Mm7|chr19 (41108979-41107759) |
| |
|
1977-2125, gnl|bosTau2|chr26 (7987889-7987740) |
|
1977-2125, gnl|canFam2|chr28 (12903073-12903297) |
|
1977-2125, gnl|echTel1|scaffold_316417 (49178-48936) |
|
1977-2125, gnl|fr1|chrUn (184925733-184925942) |
|
1977-2125, gnl|galGal2|chr6 (15908697-15908915) |
|
1977-2125, gnl|hg17|chr10 (98270704-98270927) |
|
1977-2125, gnl|Hg17|chr10 (98270880-98270732) |
|
1977-2125, gnl|mm7|chr19 (41107603-41107819) |
|
1977-2125, gnl|Mm7|chr19 (41107773-41107631) |
|
1977-2125, gnl|monDom2|scaffold_14 (26126529-26126288) |
|
1977-2125, gnl|oryCun1|scaffold_201949 (36244-36020) |
|
1977-2125, gnl|panTro1|chr8 (99959668-99959891) |
|
1977-2125, gnl|rheMac2|chr9 (96059659-96059882) |
|
1977-2125, gnl|rn3|chr1 (246528347-246528563) |
|
1977-2125, gnl|xenTro1|scaffold_1324 (5452-5679) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
193-391, gnl|bosTau2|chr26 (8038587-8038391) |
|
193-391, gnl|Hg17|chr10 (98326577-98326381) |
|
193-391, gnl|Mm7|chr19 (41150180-41149984) |
| |
|
730-1960, gnl|bosTau2|chr26 (7989089-7987869) |
|
730-1960, gnl|Hg17|chr10 (98272078-98270860) |
|
730-1960, gnl|Mm7|chr19 (41108979-41107759) |
| |
|
1977-2125, gnl|bosTau2|chr26 (7987889-7987740) |
|
1977-2125, gnl|canFam2|chr28 (12903073-12903297) |
|
1977-2125, gnl|echTel1|scaffold_316417 (49178-48936) |
|
1977-2125, gnl|fr1|chrUn (184925733-184925942) |
|
1977-2125, gnl|galGal2|chr6 (15908697-15908915) |
|
1977-2125, gnl|hg17|chr10 (98270704-98270927) |
|
1977-2125, gnl|Hg17|chr10 (98270880-98270732) |
|
1977-2125, gnl|mm7|chr19 (41107603-41107819) |
|
1977-2125, gnl|Mm7|chr19 (41107773-41107631) |
|
1977-2125, gnl|monDom2|scaffold_14 (26126529-26126288) |
|
1977-2125, gnl|oryCun1|scaffold_201949 (36244-36020) |
|
1977-2125, gnl|panTro1|chr8 (99959668-99959891) |
|
1977-2125, gnl|rheMac2|chr9 (96059659-96059882) |
|
1977-2125, gnl|rn3|chr1 (246528347-246528563) |
|
1977-2125, gnl|xenTro1|scaffold_1324 (5452-5679) |
|
fty (0.351679) |
|
sin (0.349895) |
|
fce (0.271592) |
|
ste (0.270416) |
|
ova (0.258264) |
|
med (0.232504) |
|
ece (0.229305) |
|
spc (0.226732) |
|
nbm (0.198649) |
|
fcc (0.197785) |
|
col (0.195008) |
|
rec (0.17307) |
|
duo (0.172801) |
|
nje (0.16592) |
|
csp (0.161186) |
|
mga (0.160205) |
|
lin (0.145603) |
|
spl (0.143184) |
|
pty (0.142714) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
sug (0.127291) |
|
ese (0.126502) |
|
tra (0.123092) |
|
cty (0.10408) |
|
fty (0.351679) |
|
sin (0.349895) |
|
fce (0.271592) |
|
ste (0.270416) |
|
ova (0.258264) |
|
med (0.232504) |
|
ece (0.229305) |
|
spc (0.226732) |
|
nbm (0.198649) |
|
fcc (0.197785) |
|
col (0.195008) |
|
rec (0.17307) |
|
duo (0.172801) |
|
nje (0.16592) |
|
csp (0.161186) |
|
mga (0.160205) |
|
lin (0.145603) |
|
spl (0.143184) |
|
pty (0.142714) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
sug (0.127291) |
|
ese (0.126502) |
|
tra (0.123092) |
|
cty (0.10408) |
