Non-Coding RNA Search

Ss1.1-rspc035_o17.5

Sequence:


               
               GGAGACCGGGTGTTCCTCCAGATGCCCTCTGAACAGGCTGCAGGACTGTATGCTGGGCAG
TACGTCCATTCCTCTTTTTCAGGATATTTATTGTATCCCATGTAAAAAAGAAAACAAGAG
AGAGATTTAATAGAAGAAAATGATGCACCAAAAAATCCAAATGAGAAACACAATTGCTTC
AAGATATTTACATAGTTGGAAAGTTGTATTTAAGTGAAAATTTGAACCATCATGTACAAA
TAAAAACTAAGATGCATGTTTAGTGCTCCGTGCAGCAGCTTGTAATTGAAAATGATGGGA
TAGATTTATGTATCAAGTACTGACACTTGTGTTGTACCCACTGGAATCATATTAGCTGTT
GTATGTTATGTGCTTCCATGATAACCTGCTTATTCAGATCAAAGTATTTCAGTATGAAAG
ATCATAGCTAATCAAAGTCACTCACTCATATTGTTTACTTTGAAATATTTATAAATATGG
CTTAAAGAAATGTCAATGATAACAATTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGACCGGGTGTTCCTCCAGATGCCCTCTGAACAGGCTGCAGGACTGTATGCTGGGCAG
TACGTCCATTCCTCTTTTTCAGGATATTTATTGTATCCCATGTAAAAAAGAAAACAAGAG
AGAGATTTAATAGAAGAAAATGATGCACCAAAAAATCCAAATGAGAAACACAATTGCTTC
AAGATATTTACATAGTTGGAAAGTTGTATTTAAGTGAAAATTTGAACCATCATGTACAAA
TAAAAACTAAGATGCATGTTTAGTGCTCCGTGCAGCAGCTTGTAATTGAAAATGATGGGA
TAGATTTATGTATCAAGTACTGACACTTGTGTTGTACCCACTGGAATCATATTAGCTGTT
GTATGTTATGTGCTTCCATGATAACCTGCTTATTCAGATCAAAGTATTTCAGTATGAAAG
ATCATAGCTAATCAAAGTCACTCACTCATATTGTTTACTTTGAAATATTTATAAATATGG
CTTAAAGAAATGTCAATGATAACAATTAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-140, - strand, RNAz p=0.736594

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-140, - strand, RNAz p=0.736594

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-508, gnl|bosTau2|chr1 (23526405-23526922)
               

               
               1-508, gnl|Hg17|chr3 (100997566-100998091)
               

               
               1-508, gnl|Mm7|chr16 (57488466-57487955)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-508, gnl|bosTau2|chr1 (23526405-23526922)
               

               
               1-508, gnl|Hg17|chr3 (100997566-100998091)
               

               
               1-508, gnl|Mm7|chr16 (57488466-57487955)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               aor (0.390549)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               spc (0.113366)

	1-508, gnl\|bosTau2\|chr1 (23526405-23526922)
	1-508, gnl\|Hg17\|chr3 (100997566-100998091)
	1-508, gnl\|Mm7\|chr16 (57488466-57487955)

	aor (0.390549)
	sto (0.179824)
	gul (0.177588)
	lin (0.145603)
	spc (0.113366)