Ss1.1-rspl01_a20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGGTCAGGCCTCTGGTTTTTAGATCATGGCGCTAACCTTACGACTCTGGCGCTCGCTC CCTTTGGGACGGAGCTCCGCGCGGGCACTTCGGCTCCCGACGGGTGCTGCTGGCAGCCGT GGGCGGTGCGTTCCTTGGCCACTCCGCGGCTCTGAGGTACCCTCGCAGTCCTGGCTCTCA CTTCCCTCCCCTACCGGCTGGACTCCGGCAGCCCCTTCCTTCTTCAGGCTTGGTGGCCTG GCCTCACCTTAGGAACTGAAGGAATTATCTCCGCCCGGCTGGGTAGCGAGCCCAGGGGGT GAAGGGTCAGGCCTCTGGTTTTTAGATCATGGCGCTAACCTTACGACTCTGGCGCTCGCT CCCTTTGGGACGGAGCTCCGCGCGGGCACTTCGGCTCCCGACGGGTGCTGCTGGCAGCCG TGGGCGGTGCGTTCCTTGGCCACTCCGCGGCTCTGAGGTGATGGGAAACACGGGAGCTTT CAAAAGAAGTCTTTTAATCTCTGCCTTGTCTTATTTGGGTTTTGAAACTTATCAAGTCCT TTTCCAGTCTTCTGTGGTTCATGCCACAGCCAAAGTCACTAGAGTTGAAGAAATCCTTGA ACAAGCAGACTACTTATATGAAAGTGGAGAAACAGAAAAACTTTACCAGTTGCTAACCCA GTACAAGGAAAGTGAAGATGCAGAGTTACTGTGGCGTTTGGCACGGGCATCACGTGATAT AGCTCAACTTAGTGGAACCTCAGAAGAGGAGAAAAAGCTTTTGGTGTATGAAGCCCTGGA GTATGCAAAAAGAGCCCTAGAAAAAAATGAATCAAGTTTTGCAGCTCATAAGTGGTATGC AATCTGTATTAGCGATGTTGGAGATTATGAAGGAATCAAGGCTAAAATTGCAAATGCCTA CATTATCAAGGAGCATTTTGAGAAAGCAATTGAATTGAACCCTAAAGATGCTACCTCAAT TCACCTTATGGGTATTTGGTGTTACACATTTGCTGAAATGCCCTGGTATCAAAGAAGAAT TGCTAAAATGCTGTTTGCAGCTCCTCCTAGTTCCACCTATGAGGAGGCCTTAGGCTACTT TCACAGGGCAGAGCAAGTGGATCCAAACTTCTACAGCAAAAACTTACTTCTTTTAGGAAA GACATATTTGAAGCTACATAACAAAAAGCTTGCTGCTTTCTGGCTAACAAAAGCCAAGGA CTATCCAGCACACACAGAGGAGGATAAACAGGTACAGACAGAAGCTGCTCAGTTGCTCAC AGGTTTCAGTAATAAGAACTGAGGAATTTTTCCATGAAATATTTAAGAAACATCACCTTT TCATCAAATTATAAAGATAATAAATATATTAGCCCTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGGTCAGGCCTCTGGTTTTTAGATCATGGCGCTAACCTTACGACTCTGGCGCTCGCTC CCTTTGGGACGGAGCTCCGCGCGGGCACTTCGGCTCCCGACGGGTGCTGCTGGCAGCCGT GGGCGGTGCGTTCCTTGGCCACTCCGCGGCTCTGAGGTACCCTCGCAGTCCTGGCTCTCA CTTCCCTCCCCTACCGGCTGGACTCCGGCAGCCCCTTCCTTCTTCAGGCTTGGTGGCCTG GCCTCACCTTAGGAACTGAAGGAATTATCTCCGCCCGGCTGGGTAGCGAGCCCAGGGGGT GAAGGGTCAGGCCTCTGGTTTTTAGATCATGGCGCTAACCTTACGACTCTGGCGCTCGCT CCCTTTGGGACGGAGCTCCGCGCGGGCACTTCGGCTCCCGACGGGTGCTGCTGGCAGCCG TGGGCGGTGCGTTCCTTGGCCACTCCGCGGCTCTGAGGTGATGGGAAACACGGGAGCTTT CAAAAGAAGTCTTTTAATCTCTGCCTTGTCTTATTTGGGTTTTGAAACTTATCAAGTCCT TTTCCAGTCTTCTGTGGTTCATGCCACAGCCAAAGTCACTAGAGTTGAAGAAATCCTTGA ACAAGCAGACTACTTATATGAAAGTGGAGAAACAGAAAAACTTTACCAGTTGCTAACCCA GTACAAGGAAAGTGAAGATGCAGAGTTACTGTGGCGTTTGGCACGGGCATCACGTGATAT AGCTCAACTTAGTGGAACCTCAGAAGAGGAGAAAAAGCTTTTGGTGTATGAAGCCCTGGA GTATGCAAAAAGAGCCCTAGAAAAAAATGAATCAAGTTTTGCAGCTCATAAGTGGTATGC AATCTGTATTAGCGATGTTGGAGATTATGAAGGAATCAAGGCTAAAATTGCAAATGCCTA CATTATCAAGGAGCATTTTGAGAAAGCAATTGAATTGAACCCTAAAGATGCTACCTCAAT TCACCTTATGGGTATTTGGTGTTACACATTTGCTGAAATGCCCTGGTATCAAAGAAGAAT TGCTAAAATGCTGTTTGCAGCTCCTCCTAGTTCCACCTATGAGGAGGCCTTAGGCTACTT TCACAGGGCAGAGCAAGTGGATCCAAACTTCTACAGCAAAAACTTACTTCTTTTAGGAAA GACATATTTGAAGCTACATAACAAAAAGCTTGCTGCTTTCTGGCTAACAAAAGCCAAGGA CTATCCAGCACACACAGAGGAGGATAAACAGGTACAGACAGAAGCTGCTCAGTTGCTCAC AGGTTTCAGTAATAAGAACTGAGGAATTTTTCCATGAAATATTTAAGAAACATCACCTTT TCATCAAATTATAAAGATAATAAATATATTAGCCCTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 456-1214, - strand, RNAz p=0.871944 | |
| 671-789, + strand, RNAz p=0.553701 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 456-1214, - strand, RNAz p=0.871944 | |
| 671-789, + strand, RNAz p=0.553701 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 5-253, gnl|bosTau2|chr14 (48142301-48142551) | |
| 5-253, gnl|Hg17|chr8 (87589987-87589742) | |
| 456-575, gnl|bosTau2|chr14 (48159854-48159973) | |
| 456-575, gnl|canFam2|chr29 (35661232-35661410) | |
| 456-575, gnl|dasNov1|scaffold_66996 (1419-1243) | |
| 456-575, gnl|galGal2|chr2 (122491880-122492042) | |
| 456-575, gnl|hg17|chr8 (87588325-87588504) | |
| 456-575, gnl|Hg17|chr8 (87588459-87588340) | |
| 456-575, gnl|loxAfr1|scaffold_13391 (5087-4909) | |
| 456-575, gnl|mm7|chr4 (19507672-19507503) | |
| 456-575, gnl|Mm7|chr4 (19507536-19507655) | |
| 456-575, gnl|monDom2|scaffold_3 (81595716-81595537) | |
| 456-575, gnl|oryCun1|scaffold_215329 (8890-9068) | |
| 456-575, gnl|panTro1|chr7 (89708801-89708981) | |
| 456-575, gnl|rheMac2|chr8 (89083701-89083880) | |
| 456-575, gnl|rn3|chr5 (34215992-34215812) | |
| 671-832, gnl|bosTau2|chr14 (48163216-48163377) | |
| 671-832, gnl|canFam2|chr29 (35649875-35650042) | |
| 671-832, gnl|danRer3|chrNA (81274484-81274641) | |
| 671-832, gnl|dasNov1|scaffold_66996 (8754-8587) | |
| 671-832, gnl|echTel1|scaffold_317261 (2728-2561) | |
| 671-832, gnl|fr1|chrUn (216114576-216114409) | |
| 671-832, gnl|galGal2|chr2 (122488875-122489042) | |
| 671-832, gnl|hg17|chr8 (87567825-87567992) | |
| 671-832, gnl|Hg17|chr8 (87567990-87567829) | |
| 671-832, gnl|loxAfr1|scaffold_13391 (10696-10529) | |
| 671-832, gnl|mm7|chr4 (19515839-19515672) | |
| 671-832, gnl|Mm7|chr4 (19515672-19515833) | |
| 671-832, gnl|monDom2|scaffold_3 (81614677-81614510) | |
| 671-832, gnl|panTro1|chr7 (89689722-89689889) | |
| 671-832, gnl|rheMac2|chr8 (89063330-89063497) | |
| 671-832, gnl|rn3|chr5 (34223324-34223157) | |
| 671-832, gnl|tetNig1|chrUn_random (134140118-134140285) | |
| 1096-1237, gnl|bosTau2|chr14 (48175612-48175753) | |
| 1096-1237, gnl|canFam2|chr29 (35630089-35630264) | |
| 1096-1237, gnl|danRer3|chrNA (81270253-81270408) | |
| 1096-1237, gnl|echTel1|scaffold_315081 (8791-8612) | |
| 1096-1237, gnl|fr1|chrUn (216115466-216115294) | |
| 1096-1237, gnl|galGal2|chr2 (122481881-122482039) | |
| 1096-1237, gnl|hg17|chr8 (87556158-87556333) | |
| 1096-1237, gnl|Hg17|chr8 (87556300-87556159) | |
| 1096-1237, gnl|loxAfr1|scaffold_13391 (21993-21814) | |
| 1096-1237, gnl|mm7|chr4 (19532693-19532514) | |
| 1096-1237, gnl|Mm7|chr4 (19532549-19532690) | |
| 1096-1237, gnl|monDom2|scaffold_3 (81631102-81630919) | |
| 1096-1237, gnl|oryCun1|scaffold_215145 (433-267) | |
| 1096-1237, gnl|panTro1|chr7 (89677999-89678174) | |
| 1096-1237, gnl|rheMac2|chr8 (89051667-89051842) | |
| 1096-1237, gnl|rn3|chr5 (34232821-34232642) | |
| 1096-1237, gnl|tetNig1|chrUn_random (134139336-134139506) | |
| 1096-1237, gnl|xenTro1|scaffold_492 (520923-520742) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-253, gnl|bosTau2|chr14 (48142301-48142551) | |
| 5-253, gnl|Hg17|chr8 (87589987-87589742) | |
| 456-575, gnl|bosTau2|chr14 (48159854-48159973) | |
| 456-575, gnl|canFam2|chr29 (35661232-35661410) | |
| 456-575, gnl|dasNov1|scaffold_66996 (1419-1243) | |
| 456-575, gnl|galGal2|chr2 (122491880-122492042) | |
| 456-575, gnl|hg17|chr8 (87588325-87588504) | |
| 456-575, gnl|Hg17|chr8 (87588459-87588340) | |
| 456-575, gnl|loxAfr1|scaffold_13391 (5087-4909) | |
| 456-575, gnl|mm7|chr4 (19507672-19507503) | |
| 456-575, gnl|Mm7|chr4 (19507536-19507655) | |
| 456-575, gnl|monDom2|scaffold_3 (81595716-81595537) | |
| 456-575, gnl|oryCun1|scaffold_215329 (8890-9068) | |
| 456-575, gnl|panTro1|chr7 (89708801-89708981) | |
| 456-575, gnl|rheMac2|chr8 (89083701-89083880) | |
| 456-575, gnl|rn3|chr5 (34215992-34215812) | |
| 671-832, gnl|bosTau2|chr14 (48163216-48163377) | |
| 671-832, gnl|canFam2|chr29 (35649875-35650042) | |
| 671-832, gnl|danRer3|chrNA (81274484-81274641) | |
| 671-832, gnl|dasNov1|scaffold_66996 (8754-8587) | |
| 671-832, gnl|echTel1|scaffold_317261 (2728-2561) | |
| 671-832, gnl|fr1|chrUn (216114576-216114409) | |
| 671-832, gnl|galGal2|chr2 (122488875-122489042) | |
| 671-832, gnl|hg17|chr8 (87567825-87567992) | |
| 671-832, gnl|Hg17|chr8 (87567990-87567829) | |
| 671-832, gnl|loxAfr1|scaffold_13391 (10696-10529) | |
| 671-832, gnl|mm7|chr4 (19515839-19515672) | |
| 671-832, gnl|Mm7|chr4 (19515672-19515833) | |
| 671-832, gnl|monDom2|scaffold_3 (81614677-81614510) | |
| 671-832, gnl|panTro1|chr7 (89689722-89689889) | |
| 671-832, gnl|rheMac2|chr8 (89063330-89063497) | |
| 671-832, gnl|rn3|chr5 (34223324-34223157) | |
| 671-832, gnl|tetNig1|chrUn_random (134140118-134140285) | |
| 1096-1237, gnl|bosTau2|chr14 (48175612-48175753) | |
| 1096-1237, gnl|canFam2|chr29 (35630089-35630264) | |
| 1096-1237, gnl|danRer3|chrNA (81270253-81270408) | |
| 1096-1237, gnl|echTel1|scaffold_315081 (8791-8612) | |
| 1096-1237, gnl|fr1|chrUn (216115466-216115294) | |
| 1096-1237, gnl|galGal2|chr2 (122481881-122482039) | |
| 1096-1237, gnl|hg17|chr8 (87556158-87556333) | |
| 1096-1237, gnl|Hg17|chr8 (87556300-87556159) | |
| 1096-1237, gnl|loxAfr1|scaffold_13391 (21993-21814) | |
| 1096-1237, gnl|mm7|chr4 (19532693-19532514) | |
| 1096-1237, gnl|Mm7|chr4 (19532549-19532690) | |
| 1096-1237, gnl|monDom2|scaffold_3 (81631102-81630919) | |
| 1096-1237, gnl|oryCun1|scaffold_215145 (433-267) | |
| 1096-1237, gnl|panTro1|chr7 (89677999-89678174) | |
| 1096-1237, gnl|rheMac2|chr8 (89051667-89051842) | |
| 1096-1237, gnl|rn3|chr5 (34232821-34232642) | |
| 1096-1237, gnl|tetNig1|chrUn_random (134139336-134139506) | |
| 1096-1237, gnl|xenTro1|scaffold_492 (520923-520742) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| sug (0.509165) | |
| nms (0.427716) | |
| amn (0.417711) | |
| sin (0.349895) | |
| vin (0.332557) | |
| isp (0.300752) | |
| csk (0.281492) | |
| fce (0.271592) | |
| kid (0.259471) | |
| hea (0.204499) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| mga (0.160205) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| cst (0.140036) | |
| che (0.136314) | |
| ste (0.135208) | |
| pla (0.133672) | |
| thg (0.126791) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.509165) | |
| nms (0.427716) | |
| amn (0.417711) | |
| sin (0.349895) | |
| vin (0.332557) | |
| isp (0.300752) | |
| csk (0.281492) | |
| fce (0.271592) | |
| kid (0.259471) | |
| hea (0.204499) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| mga (0.160205) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| cst (0.140036) | |
| che (0.136314) | |
| ste (0.135208) | |
| pla (0.133672) | |
| thg (0.126791) |