Non-Coding RNA Search

Ss1.1-rspl01_c5.5

Sequence:


               
               GCAGCTTCCCTGGCCGGAGGCGCGATGGGCTGCGGGAACTCCACTGCCACCAGCGCGGGC
GCGAGCCAAGGCCCTGCAGGAGCAGCTAAAGATGTAACAGAAGACTCGATAGCAGAAGAT
GACAAGAGGAGAAACTACGGAGGGGTGTATGTTGGTCTACCATCTGAAGCCGTCAATATG
GTATCCAGCCAAACAAAGACGGTACGAAAAAATTAGAAGAAAATATCATGACTCAATCAG
CAAGAGCTTGCTCATCAAGATCTGGATGGGATTTCGGCGTCGTGGGACATTGTGACGTGC
ACAGACATTTCCAAGGAAATTCCCAGTTTATAGTTAATGCCATGGGTACACATTGAATGT
TACAGGACTAGAAAGGAATGGGTTGAACAGTACACTCATACCTGGCACTTGCCATGGTTC
ACCTGTGCAAGACGAGCTCACAAGCGGTTCTTGACCAGCTGGCCGCTGGCTCCTAGCGGT
CATCACAGCTCGTGAAGATCATGTCTTTTTCATTGATACTTTTTGGATCGTTTTTATATA
ACAAAATCCTTCATCTATTTATAACTTAAAATAAGGCACGGTAAATGAATTACCCAAAGT
AATATATTTGTTCTCTTTCACTATTTCTATTTCATGTTAATTGTCAGCTGTCAAAGTGAT
TCTAATGGTTCGCTCTTTTTTTACTATTTGTTTTTCAGCTTTATTTAAATGTCAGACGAT
TTTCTTTATTAAGGATGGTGTTATTACATTGTAACACTTAAACTGCTGAGATTTGCATGC
TATACCTACCATTTGATTTACTTCCTATTTTCTTTAGTCAAAGGCTTATTATGTAACTGC
GAATACTTCATAGCCACGAGGCTCCCATTTCTACTTGTGTGTGATCAGAGCATTTCATCA
TGTTAATTCTATACTGTTTTCAAGAACTTGTCACTGATGGTTAGTGGGATATTTGGGAAT
TTCTTACTTTGATAGTGAACATGCATCCACTTCGTACTGCACTGTAAATCACTTAATGTG
CCAATGTATTTCAATAATTAAAACTTTTTACCCCCCTTTAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCTTCCCTGGCCGGAGGCGCGATGGGCTGCGGGAACTCCACTGCCACCAGCGCGGGC
GCGAGCCAAGGCCCTGCAGGAGCAGCTAAAGATGTAACAGAAGACTCGATAGCAGAAGAT
GACAAGAGGAGAAACTACGGAGGGGTGTATGTTGGTCTACCATCTGAAGCCGTCAATATG
GTATCCAGCCAAACAAAGACGGTACGAAAAAATTAGAAGAAAATATCATGACTCAATCAG
CAAGAGCTTGCTCATCAAGATCTGGATGGGATTTCGGCGTCGTGGGACATTGTGACGTGC
ACAGACATTTCCAAGGAAATTCCCAGTTTATAGTTAATGCCATGGGTACACATTGAATGT
TACAGGACTAGAAAGGAATGGGTTGAACAGTACACTCATACCTGGCACTTGCCATGGTTC
ACCTGTGCAAGACGAGCTCACAAGCGGTTCTTGACCAGCTGGCCGCTGGCTCCTAGCGGT
CATCACAGCTCGTGAAGATCATGTCTTTTTCATTGATACTTTTTGGATCGTTTTTATATA
ACAAAATCCTTCATCTATTTATAACTTAAAATAAGGCACGGTAAATGAATTACCCAAAGT
AATATATTTGTTCTCTTTCACTATTTCTATTTCATGTTAATTGTCAGCTGTCAAAGTGAT
TCTAATGGTTCGCTCTTTTTTTACTATTTGTTTTTCAGCTTTATTTAAATGTCAGACGAT
TTTCTTTATTAAGGATGGTGTTATTACATTGTAACACTTAAACTGCTGAGATTTGCATGC
TATACCTACCATTTGATTTACTTCCTATTTTCTTTAGTCAAAGGCTTATTATGTAACTGC
GAATACTTCATAGCCACGAGGCTCCCATTTCTACTTGTGTGTGATCAGAGCATTTCATCA
TGTTAATTCTATACTGTTTTCAAGAACTTGTCACTGATGGTTAGTGGGATATTTGGGAAT
TTCTTACTTTGATAGTGAACATGCATCCACTTCGTACTGCACTGTAAATCACTTAATGTG
CCAATGTATTTCAATAATTAAAACTTTTTACCCCCCTTTAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               317-1060, gnl|bosTau2|chr2 (20299581-20300348)
               

               
               317-1060, gnl|Hg17|chr12 (104266984-104267763)
               

               
               317-1060, gnl|Mm7|chr10 (83303525-83304271)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               317-1060, gnl|bosTau2|chr2 (20299581-20300348)
               

               
               317-1060, gnl|Hg17|chr12 (104266984-104267763)
               

               
               317-1060, gnl|Mm7|chr10 (83303525-83304271)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

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               thg (0.633955)
               

               
               lin (0.436808)
               

               
               aor (0.390549)
               

               
               gul (0.355177)
               

               
               spl (0.286369)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.633955)
               

               
               lin (0.436808)
               

               
               aor (0.390549)
               

               
               gul (0.355177)
               

               
               spl (0.286369)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	317-1060, gnl\|bosTau2\|chr2 (20299581-20300348)
	317-1060, gnl\|Hg17\|chr12 (104266984-104267763)
	317-1060, gnl\|Mm7\|chr10 (83303525-83304271)

	thg (0.633955)
	lin (0.436808)
	aor (0.390549)
	gul (0.355177)
	spl (0.286369)
	ece (0.229305)
	fcc (0.197785)
	sag (0.182715)
	cut (0.169924)
	nje (0.16592)
	nco (0.161734)
	fat (0.147427)
	hlv (0.139256)
	ste (0.135208)
	ret (0.128733)
	bla (0.124347)
	eru (0.120048)
	pgl (0.118483)
	ebs (0.118301)