Non-Coding RNA Search

Ss1.1-rspl01_h17.5

Sequence:


               
               CACCTATGAATTGGTGGTCTACCTGCTCAATGGATAGCACCACCAGGCTGCTGTACTATA
AAGAGGGAAGACCAAAAGATACAGTGGACCATGGAGTACCGAAGCCAGCATGGTGGACAG
AAGGAAAATAGTTTGGGAACATGCAACTGTGTATTGCCTAAGTGGAAGTTTGGTTGTAGG
AAGTAAAGTAATCATAACCACATTACTTAGTCTTTTTAGTAATGTGACAAAATAAACCTT
GGCTGCCTCTGAGAAAAAGCCTTTATTAGAAGCGGTCCTTCCTCAAAGTTGCCATTTTTC
TCTACCATATCCATGGGACACAGTTGGCATTTTGTTGATTTATGGCAATCAGAATATAGT
GTTTATTCCATGAGCACTTTTCCAGTCTTCTAGACAAAACCATCCCTAATTATATATACT
ATAACTATCCAAAAGATAGTATTGACAGTCGTAAATTTCTCACTTCTGGCTTGTATATAA
TTCCTCTAAATTGAAAAATAACAATAAGAGTATATACATTTCCTTGAGAGGATCTGGCAC
AATATTTTAAAGTTAGCTGTTTGGTATTAGTAGTCACTGTGTTTGATAACAAATGAAGTA
GTGTCTAAATATTGTGTATATTTTGGTTTCCACTGCTCACAGGTGCTTTATGTTTAGCAT
AATATAAACAATTTGTTTGCTAATGTATTAACTCAAATGGTAATAGTTTGAGACAAAATA
ATCCACTAAAATATTGATTCTTGGCCATTTCAATAACTTGAGCATGTTCTCTTATTTTTT
TCCTAACCTTATGCTACATGAACAAATGCAATTGTCTTCAATGATTTATTAATTATGAGC
TTGAATTATCACCTGTCACACACCAAGGTGTCATTTTCTTAAAAGGGAAAAATTTACTGC
TTCAAAATCTTTTATTTGGTTTCACATTAAGAATTTGAACCTTTGAAATATTTCCAGAAG
ACCTGCATACATTGCATTTATTTAGTGGAGAAAATGGTAATTTTCAGCTTTACCCTTACA
AGGTGTTTGTTTTGTTTTGTTTTGTTTTAAGGTGACATTATAAATATCTTGAGCAGCATA
AACATCATAAAAGAGGGGCCCTCTTGAGCAGGTAGCGATCCTAGTTGACTTACGGATTTA
TAAATAAACTACTTTGCCAAGAAATTTGTTCCATCCTAATTTTTTGAATGGCAAGTCATA
GAGTAAATTCAGATTAAGTGTGTTAACAGGATGTAACTTTTACATTTTGCCATTGAGTTC
AGCTGCACCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCTATGAATTGGTGGTCTACCTGCTCAATGGATAGCACCACCAGGCTGCTGTACTATA
AAGAGGGAAGACCAAAAGATACAGTGGACCATGGAGTACCGAAGCCAGCATGGTGGACAG
AAGGAAAATAGTTTGGGAACATGCAACTGTGTATTGCCTAAGTGGAAGTTTGGTTGTAGG
AAGTAAAGTAATCATAACCACATTACTTAGTCTTTTTAGTAATGTGACAAAATAAACCTT
GGCTGCCTCTGAGAAAAAGCCTTTATTAGAAGCGGTCCTTCCTCAAAGTTGCCATTTTTC
TCTACCATATCCATGGGACACAGTTGGCATTTTGTTGATTTATGGCAATCAGAATATAGT
GTTTATTCCATGAGCACTTTTCCAGTCTTCTAGACAAAACCATCCCTAATTATATATACT
ATAACTATCCAAAAGATAGTATTGACAGTCGTAAATTTCTCACTTCTGGCTTGTATATAA
TTCCTCTAAATTGAAAAATAACAATAAGAGTATATACATTTCCTTGAGAGGATCTGGCAC
AATATTTTAAAGTTAGCTGTTTGGTATTAGTAGTCACTGTGTTTGATAACAAATGAAGTA
GTGTCTAAATATTGTGTATATTTTGGTTTCCACTGCTCACAGGTGCTTTATGTTTAGCAT
AATATAAACAATTTGTTTGCTAATGTATTAACTCAAATGGTAATAGTTTGAGACAAAATA
ATCCACTAAAATATTGATTCTTGGCCATTTCAATAACTTGAGCATGTTCTCTTATTTTTT
TCCTAACCTTATGCTACATGAACAAATGCAATTGTCTTCAATGATTTATTAATTATGAGC
TTGAATTATCACCTGTCACACACCAAGGTGTCATTTTCTTAAAAGGGAAAAATTTACTGC
TTCAAAATCTTTTATTTGGTTTCACATTAAGAATTTGAACCTTTGAAATATTTCCAGAAG
ACCTGCATACATTGCATTTATTTAGTGGAGAAAATGGTAATTTTCAGCTTTACCCTTACA
AGGTGTTTGTTTTGTTTTGTTTTGTTTTAAGGTGACATTATAAATATCTTGAGCAGCATA
AACATCATAAAAGAGGGGCCCTCTTGAGCAGGTAGCGATCCTAGTTGACTTACGGATTTA
TAAATAAACTACTTTGCCAAGAAATTTGTTCCATCCTAATTTTTTGAATGGCAAGTCATA
GAGTAAATTCAGATTAAGTGTGTTAACAGGATGTAACTTTTACATTTTGCCATTGAGTTC
AGCTGCACCTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               194-310, - strand, RNAz p=0.898786

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-310, - strand, RNAz p=0.898786

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1272, gnl|bosTau2|chr1 (80255562-80254276)
               

               
               1-1272, gnl|Hg17|chr3 (142177957-142179215)
               

               
               1-1272, gnl|Mm7|chr9 (96720725-96719538)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1272, gnl|bosTau2|chr1 (80255562-80254276)
               

               
               1-1272, gnl|Hg17|chr3 (142177957-142179215)
               

               
               1-1272, gnl|Mm7|chr9 (96720725-96719538)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               vin (0.332557)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               thg (0.126791)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               thg (0.126791)

	1-1272, gnl\|bosTau2\|chr1 (80255562-80254276)
	1-1272, gnl\|Hg17\|chr3 (142177957-142179215)
	1-1272, gnl\|Mm7\|chr9 (96720725-96719538)