Non-Coding RNA Search

Ss1.1-rspl01_h9.5S

Sequence:


               
               TGCCATCCACTTTTTCTTCTTGTTTGTTCCCTCTAGCATTTCCACCAATAGACTCTGCTC
ACTTGGGATTGAGGTGACAGTTCACCTGGATTTTCTGGCTCATAGATGCCTTACTTACAC
ATTTATTTCTGCTCATTCTCCTAAGCCTCTTAAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCATCCACTTTTTCTTCTTGTTTGTTCCCTCTAGCATTTCCACCAATAGACTCTGCTC
ACTTGGGATTGAGGTGACAGTTCACCTGGATTTTCTGGCTCATAGATGCCTTACTTACAC
ATTTATTTCTGCTCATTCTCCTAAGCCTCTTAAGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-112, - strand, RNAz p=0.879783

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-112, - strand, RNAz p=0.879783

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               3-155, gnl|bosTau2|chr1 (41162459-41162297)
               

               
               3-155, gnl|canFam2|chr33 (26130013-26130281)
               

               
               3-155, gnl|dasNov1|scaffold_6342 (13617-13906)
               

               
               3-155, gnl|hg17|chr3 (120636574-120636849)
               

               
               3-155, gnl|Hg17|chr3 (120636808-120636662)
               

               
               3-155, gnl|loxAfr1|scaffold_9408 (8897-8639)
               

               
               3-155, gnl|mm7|chr16 (38298990-38298750)
               

               
               3-155, gnl|monDom2|scaffold_24 (15994628-15994915)
               

               
               3-155, gnl|panTro1|chr2 (122356484-122356759)
               

               
               3-155, gnl|rheMac2|chr2 (39464098-39464406)
               

               
               3-155, gnl|rn3|chr11 (63999464-63999703)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-155, gnl|bosTau2|chr1 (41162459-41162297)
               

               
               3-155, gnl|canFam2|chr33 (26130013-26130281)
               

               
               3-155, gnl|dasNov1|scaffold_6342 (13617-13906)
               

               
               3-155, gnl|hg17|chr3 (120636574-120636849)
               

               
               3-155, gnl|Hg17|chr3 (120636808-120636662)
               

               
               3-155, gnl|loxAfr1|scaffold_9408 (8897-8639)
               

               
               3-155, gnl|mm7|chr16 (38298990-38298750)
               

               
               3-155, gnl|monDom2|scaffold_24 (15994628-15994915)
               

               
               3-155, gnl|panTro1|chr2 (122356484-122356759)
               

               
               3-155, gnl|rheMac2|chr2 (39464098-39464406)
               

               
               3-155, gnl|rn3|chr11 (63999464-63999703)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	3-155, gnl\|bosTau2\|chr1 (41162459-41162297)
	3-155, gnl\|canFam2\|chr33 (26130013-26130281)
	3-155, gnl\|dasNov1\|scaffold_6342 (13617-13906)
	3-155, gnl\|hg17\|chr3 (120636574-120636849)
	3-155, gnl\|Hg17\|chr3 (120636808-120636662)
	3-155, gnl\|loxAfr1\|scaffold_9408 (8897-8639)
	3-155, gnl\|mm7\|chr16 (38298990-38298750)
	3-155, gnl\|monDom2\|scaffold_24 (15994628-15994915)
	3-155, gnl\|panTro1\|chr2 (122356484-122356759)
	3-155, gnl\|rheMac2\|chr2 (39464098-39464406)
	3-155, gnl\|rn3\|chr11 (63999464-63999703)