Ss1.1-rspl01_k4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGCGTCGTCGGTGCCTGCGCCGCTCGCTCTTCCTCGGTTCTCCCCTCCCGGCTGAAGA CCGGGGACCGGAGCGAGCAGACTGGGACCATGTTCCGACGCAAGCTGACGGCCCTCGACT ACCACAATCCTGCTGGCTTCAACTGCAAAGATGAAACAGAATTTAGAAACTTTATTGTTT GGCTTGAAGACCAGAAAATCAGACACTACAAGATTGAAGACAGAGGTAATTTAAGAAACA TCCACAGCAGTGACTGGCCCAAGTTCTTTGAGAAGTATCTCAGAGATGTTAACTGTCCTT TCAAGATTCAGGATCGACAAGAAGCAATTGACTGGCTTCTTGGTTTAGCTGTTAGACTTG AATACGGAGATAATGCTGAAAAGTACAAGGACTTGGTACCTGATAATACAAAAAATGCTG ACAATGCAGCTAAAAATGCAGAGCCATTGATCAACTTGGATGTAAATAATCCTGATTTTA AAGCTGGTGTCATGGCTTTGGCTAACCTTCTTCAGATTCAGCGTCATGATGATTACCTGG TAATGCTTAAGGCAATTCGCATTTTGGTCCAGGAGCGCCTGACACAGGATGCAGTTGCTA AAGCAAATCAAACAAAAGAGGGCTTGCCTGTTGCTTTAGACAAGCATATTCTTGGTTTTG ACACAGGAGATGCGGTTCTTAACGAAGCTGCTCAAATTCTGCGATTGCTGCATATAGAAG AGCTCAGAGAGCTACAGACAAAAATTAATGAAGCCATAGTAGCTGTTCAGGCCATTATTG CTGATCCAAAGACAGACCATAGACTGGGGAAAGTTGGAAGATGAACGTTTTAGGATTTCA GCTTCTCACCTACTTAGTACAATTGGGAACCATGTATACACTCTGGCATGTGTTTGGAAA TGTCATGTTTTTGAGGGAAGAATCTCAGAAAATTGACTACATTCTATAGATTTACCATCA TTGCTTTTTCTTTAATAAAGTTGGGAAAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGCGTCGTCGGTGCCTGCGCCGCTCGCTCTTCCTCGGTTCTCCCCTCCCGGCTGAAGA CCGGGGACCGGAGCGAGCAGACTGGGACCATGTTCCGACGCAAGCTGACGGCCCTCGACT ACCACAATCCTGCTGGCTTCAACTGCAAAGATGAAACAGAATTTAGAAACTTTATTGTTT GGCTTGAAGACCAGAAAATCAGACACTACAAGATTGAAGACAGAGGTAATTTAAGAAACA TCCACAGCAGTGACTGGCCCAAGTTCTTTGAGAAGTATCTCAGAGATGTTAACTGTCCTT TCAAGATTCAGGATCGACAAGAAGCAATTGACTGGCTTCTTGGTTTAGCTGTTAGACTTG AATACGGAGATAATGCTGAAAAGTACAAGGACTTGGTACCTGATAATACAAAAAATGCTG ACAATGCAGCTAAAAATGCAGAGCCATTGATCAACTTGGATGTAAATAATCCTGATTTTA AAGCTGGTGTCATGGCTTTGGCTAACCTTCTTCAGATTCAGCGTCATGATGATTACCTGG TAATGCTTAAGGCAATTCGCATTTTGGTCCAGGAGCGCCTGACACAGGATGCAGTTGCTA AAGCAAATCAAACAAAAGAGGGCTTGCCTGTTGCTTTAGACAAGCATATTCTTGGTTTTG ACACAGGAGATGCGGTTCTTAACGAAGCTGCTCAAATTCTGCGATTGCTGCATATAGAAG AGCTCAGAGAGCTACAGACAAAAATTAATGAAGCCATAGTAGCTGTTCAGGCCATTATTG CTGATCCAAAGACAGACCATAGACTGGGGAAAGTTGGAAGATGAACGTTTTAGGATTTCA GCTTCTCACCTACTTAGTACAATTGGGAACCATGTATACACTCTGGCATGTGTTTGGAAA TGTCATGTTTTTGAGGGAAGAATCTCAGAAAATTGACTACATTCTATAGATTTACCATCA TTGCTTTTTCTTTAATAAAGTTGGGAAAGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 75-413, gnl|bosTau2|chr2 (82173199-82173536) | |
| 75-413, gnl|Hg17|chr2 (112414808-112414521) | |
| 149-275, gnl|bosTau2|chr10 (29680373-29680247) | |
| 149-275, gnl|canFam2|chr8 (31231973-31232144) | |
| 149-275, gnl|danRer3|chr12 (11635985-11635824) | |
| 149-275, gnl|dasNov1|scaffold_20921 (2338-2509) | |
| 149-275, gnl|echTel1|scaffold_11916 (616-739) | |
| 149-275, gnl|fr1|chrUn (222146020-222145861) | |
| 149-275, gnl|galGal2|chr5 (54762893-54763066) | |
| 149-275, gnl|hg17|chr14 (51527758-51527930) | |
| 149-275, gnl|Hg17|chr14 (51527783-51527909) | |
| 149-275, gnl|loxAfr1|scaffold_1117 (77972-78143) | |
| 149-275, gnl|mm7|chr14 (17480702-17480529) | |
| 149-275, gnl|Mm7|chr14 (17480674-17480548) | |
| 149-275, gnl|monDom2|scaffold_73 (8107825-8108011) | |
| 149-275, gnl|oryCun1|scaffold_203177 (171856-172026) | |
| 149-275, gnl|panTro1|chr15 (50940071-50940243) | |
| 149-275, gnl|rheMac2|chr7 (115010657-115010830) | |
| 149-275, gnl|rn3|chr15 (4791355-4791528) | |
| 149-275, gnl|tetNig1|chr3 (3728108-3728276) | |
| 149-275, gnl|xenTro1|scaffold_355 (4017-4164) | |
| 444-565, gnl|bosTau2|chr10 (29672167-29672043) | |
| 444-565, gnl|canFam2|chr8 (31239892-31240040) | |
| 444-565, gnl|danRer3|chr12 (11630986-11630837) | |
| 444-565, gnl|dasNov1|scaffold_20921 (7511-7668) | |
| 444-565, gnl|echTel1|scaffold_309578 (153006-153163) | |
| 444-565, gnl|fr1|chrUn (222145239-222145134) | |
| 444-565, gnl|galGal2|chr5 (54766355-54766490) | |
| 444-565, gnl|hg17|chr14 (51536136-51536288) | |
| 444-565, gnl|Hg17|chr14 (51536152-51536280) | |
| 444-565, gnl|loxAfr1|scaffold_101134 (1813-1977) | |
| 444-565, gnl|mm7|chr14 (17474298-17474147) | |
| 444-565, gnl|Mm7|chr14 (17474275-17474151) | |
| 444-565, gnl|monDom2|scaffold_73 (8118257-8118423) | |
| 444-565, gnl|oryCun1|scaffold_203177 (185065-185225) | |
| 444-565, gnl|panTro1|chr15 (50949304-50949452) | |
| 444-565, gnl|rheMac2|chr7 (115018845-115018997) | |
| 444-565, gnl|rn3|chr15 (4796836-4796987) | |
| 444-565, gnl|tetNig1|chr3 (3728720-3728868) | |
| 444-565, gnl|xenTro1|scaffold_355 (7388-7534) | |
| 668-992, gnl|bosTau2|chr10 (29667934-29667612) | |
| 668-992, gnl|Hg17|chr14 (51540828-51541163) | |
| 668-992, gnl|Mm7|chr14 (17470221-17469897) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-413, gnl|bosTau2|chr2 (82173199-82173536) | |
| 75-413, gnl|Hg17|chr2 (112414808-112414521) | |
| 149-275, gnl|bosTau2|chr10 (29680373-29680247) | |
| 149-275, gnl|canFam2|chr8 (31231973-31232144) | |
| 149-275, gnl|danRer3|chr12 (11635985-11635824) | |
| 149-275, gnl|dasNov1|scaffold_20921 (2338-2509) | |
| 149-275, gnl|echTel1|scaffold_11916 (616-739) | |
| 149-275, gnl|fr1|chrUn (222146020-222145861) | |
| 149-275, gnl|galGal2|chr5 (54762893-54763066) | |
| 149-275, gnl|hg17|chr14 (51527758-51527930) | |
| 149-275, gnl|Hg17|chr14 (51527783-51527909) | |
| 149-275, gnl|loxAfr1|scaffold_1117 (77972-78143) | |
| 149-275, gnl|mm7|chr14 (17480702-17480529) | |
| 149-275, gnl|Mm7|chr14 (17480674-17480548) | |
| 149-275, gnl|monDom2|scaffold_73 (8107825-8108011) | |
| 149-275, gnl|oryCun1|scaffold_203177 (171856-172026) | |
| 149-275, gnl|panTro1|chr15 (50940071-50940243) | |
| 149-275, gnl|rheMac2|chr7 (115010657-115010830) | |
| 149-275, gnl|rn3|chr15 (4791355-4791528) | |
| 149-275, gnl|tetNig1|chr3 (3728108-3728276) | |
| 149-275, gnl|xenTro1|scaffold_355 (4017-4164) | |
| 444-565, gnl|bosTau2|chr10 (29672167-29672043) | |
| 444-565, gnl|canFam2|chr8 (31239892-31240040) | |
| 444-565, gnl|danRer3|chr12 (11630986-11630837) | |
| 444-565, gnl|dasNov1|scaffold_20921 (7511-7668) | |
| 444-565, gnl|echTel1|scaffold_309578 (153006-153163) | |
| 444-565, gnl|fr1|chrUn (222145239-222145134) | |
| 444-565, gnl|galGal2|chr5 (54766355-54766490) | |
| 444-565, gnl|hg17|chr14 (51536136-51536288) | |
| 444-565, gnl|Hg17|chr14 (51536152-51536280) | |
| 444-565, gnl|loxAfr1|scaffold_101134 (1813-1977) | |
| 444-565, gnl|mm7|chr14 (17474298-17474147) | |
| 444-565, gnl|Mm7|chr14 (17474275-17474151) | |
| 444-565, gnl|monDom2|scaffold_73 (8118257-8118423) | |
| 444-565, gnl|oryCun1|scaffold_203177 (185065-185225) | |
| 444-565, gnl|panTro1|chr15 (50949304-50949452) | |
| 444-565, gnl|rheMac2|chr7 (115018845-115018997) | |
| 444-565, gnl|rn3|chr15 (4796836-4796987) | |
| 444-565, gnl|tetNig1|chr3 (3728720-3728868) | |
| 444-565, gnl|xenTro1|scaffold_355 (7388-7534) | |
| 668-992, gnl|bosTau2|chr10 (29667934-29667612) | |
| 668-992, gnl|Hg17|chr14 (51540828-51541163) | |
| 668-992, gnl|Mm7|chr14 (17470221-17469897) |
| Expressed library(ies): 62 entry(ies) | More info |
| Expressed library(ies): 62 entry(ies) | Help | Less info |
| ski (1.90756) | |
| tbr (1.54178) | |
| isp (1.50376) | |
| fat (1.47427) | |
| lyg (1.33103) | |
| thg (1.26791) | |
| gul (1.06553) | |
| bfe (1.049) | |
| vin (0.997672) | |
| nep (0.919625) | |
| spl (0.859107) | |
| spc (0.793561) | |
| bla (0.746083) | |
| mgp (0.692042) | |
| ldo (0.679018) | |
| ste (0.676041) | |
| mga (0.64082) | |
| sme (0.610874) | |
| lin (0.582411) | |
| med (0.58126) | |
| che (0.545256) | |
| mgm (0.541028) | |
| pro (0.512033) | |
| sug (0.509165) | |
| nco (0.485201) | |
| cbe (0.478469) | |
| pgl (0.473934) | |
| liv (0.438853) | |
| csk (0.422238) | |
| hea (0.408998) | |
| ssp (0.406559) | |
| col (0.390016) | |
| ova (0.387397) | |
| ret (0.3862) | |
| elu (0.385356) | |
| cmu (0.372787) | |
| eru (0.360144) | |
| sto (0.359648) | |
| ton (0.351) | |
| nje (0.33184) | |
| cte (0.29274) | |
| fce (0.271592) | |
| pla (0.267344) | |
| tra (0.246184) | |
| jca (0.22792) | |
| tes (0.207814) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| fty (0.17584) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| fco (0.157208) | |
| cst (0.140036) | |
| kid (0.129735) | |
| ese (0.126502) | |
| eep (0.122564) | |
| clu (0.119646) | |
| eje (0.0988338) |
| Expressed library(ies): 62 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ski (1.90756) | |
| tbr (1.54178) | |
| isp (1.50376) | |
| fat (1.47427) | |
| lyg (1.33103) | |
| thg (1.26791) | |
| gul (1.06553) | |
| bfe (1.049) | |
| vin (0.997672) | |
| nep (0.919625) | |
| spl (0.859107) | |
| spc (0.793561) | |
| bla (0.746083) | |
| mgp (0.692042) | |
| ldo (0.679018) | |
| ste (0.676041) | |
| mga (0.64082) | |
| sme (0.610874) | |
| lin (0.582411) | |
| med (0.58126) | |
| che (0.545256) | |
| mgm (0.541028) | |
| pro (0.512033) | |
| sug (0.509165) | |
| nco (0.485201) | |
| cbe (0.478469) | |
| pgl (0.473934) | |
| liv (0.438853) | |
| csk (0.422238) | |
| hea (0.408998) | |
| ssp (0.406559) | |
| col (0.390016) | |
| ova (0.387397) | |
| ret (0.3862) | |
| elu (0.385356) | |
| cmu (0.372787) | |
| eru (0.360144) | |
| sto (0.359648) | |
| ton (0.351) | |
| nje (0.33184) | |
| cte (0.29274) | |
| fce (0.271592) | |
| pla (0.267344) | |
| tra (0.246184) | |
| jca (0.22792) | |
| tes (0.207814) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| fty (0.17584) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| fco (0.157208) | |
| cst (0.140036) | |
| kid (0.129735) | |
| ese (0.126502) | |
| eep (0.122564) | |
| clu (0.119646) | |
| eje (0.0988338) |