Ss1.1-rspl01_l3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGTTATCAAGAAAACAGTGGGGTGTGGGGCCCCAGGTTGCAGGTCCCTGCCCCTTGTC GCCTGGCATTTAGCCACTGAAAGCTGGCAAGGCACAACAAAGAACTTCAGACCATGCTGA AACCGGGTGGCCAAGTGGATGGAGACGAAGCACTGGAGTTTTACGCCAAGCACACAGCCC AGATAGAGATCGTCAGATTAGACAGGACCATGGAACAGATTGTCTTCCCTGTGCCCAGCA TATGTGAATTCCTGACCAAGGAGTCAAAACTCCGAATATACTACACTACAGAGAGGGATG AACAAGGCAGCAAGATCAATGACTTCTTCCTGCGGTCTGAAGACCTCTTCAATGAGATGA ACTGGCAGAAGAAGCTGAGAGCCCAGCCCGTCCTGTACTGGTGCGCCCGCAACATGTCTT TCTGGAGCAGCATTTCGTTTAACCTGGCGGTCCTGATGAATCTGCTCGTGGCATTTTTCT ACCCATTTAAAGGAGTCCGAGGAGGAACACTGGAGCCACACTGGTCCGGACTGCTGTGGA CAGCCATGCTCATATCACTGGCCATCGTCATTGCCCTCCCCAAGCCCCACGGCATCCGGG CCTTAATTGCTTCCACAATTCTCCGGTTGATATTTTCGGTTGGGCTACAACCCACATTGT TTCTTCTGGGAGCTTTCAACGTCTGCAATAAAATTATCTTTCTGATGAGCTTTGTGGGCA ACTGTGGAACCTTCACCAGAGGCTACCGAGCCATGGTTCTAGACGTGGAGTTCCTCTATC ATCTGCTGTATCTGCTGATCTGCGCCATGGGACTCTTCGTCCATGAATTCTTCTACAGTT TGCTGCTTTTTGATCTAGTGTACAGAGAAGAGACTTTGCTTAACGTCATTAAAAGTGTCA CTCGCAACGGACGCTCCATCATCCTGACGGCAGTTCTGGCTTTGATCCTGGTTTACCTGT TCTCAATAGTGGGCTACCTTTTCTTCAAGGATGACTTTATCTTGGAAGTAGATAGGCTGC CCAATGAAACTGCTCTTCCAGAAGCCAGCGAGAGTTTGGCAAGTGAGTTCCTGTACTCTG ACGTGTGTAGGGTGGAGACTGGGGAAAACTGCTCCTCTCCTGCACCCAAAGAAGAGTTGG TCCCTGCTGAGGAGACAGAGCAAGATAAAGAGCACACGTGTGAGACGCTGCTGATGTGCA TCGTCACGGTGCTGAGTCACGGGCTGCGGAGCGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGTTATCAAGAAAACAGTGGGGTGTGGGGCCCCAGGTTGCAGGTCCCTGCCCCTTGTC GCCTGGCATTTAGCCACTGAAAGCTGGCAAGGCACAACAAAGAACTTCAGACCATGCTGA AACCGGGTGGCCAAGTGGATGGAGACGAAGCACTGGAGTTTTACGCCAAGCACACAGCCC AGATAGAGATCGTCAGATTAGACAGGACCATGGAACAGATTGTCTTCCCTGTGCCCAGCA TATGTGAATTCCTGACCAAGGAGTCAAAACTCCGAATATACTACACTACAGAGAGGGATG AACAAGGCAGCAAGATCAATGACTTCTTCCTGCGGTCTGAAGACCTCTTCAATGAGATGA ACTGGCAGAAGAAGCTGAGAGCCCAGCCCGTCCTGTACTGGTGCGCCCGCAACATGTCTT TCTGGAGCAGCATTTCGTTTAACCTGGCGGTCCTGATGAATCTGCTCGTGGCATTTTTCT ACCCATTTAAAGGAGTCCGAGGAGGAACACTGGAGCCACACTGGTCCGGACTGCTGTGGA CAGCCATGCTCATATCACTGGCCATCGTCATTGCCCTCCCCAAGCCCCACGGCATCCGGG CCTTAATTGCTTCCACAATTCTCCGGTTGATATTTTCGGTTGGGCTACAACCCACATTGT TTCTTCTGGGAGCTTTCAACGTCTGCAATAAAATTATCTTTCTGATGAGCTTTGTGGGCA ACTGTGGAACCTTCACCAGAGGCTACCGAGCCATGGTTCTAGACGTGGAGTTCCTCTATC ATCTGCTGTATCTGCTGATCTGCGCCATGGGACTCTTCGTCCATGAATTCTTCTACAGTT TGCTGCTTTTTGATCTAGTGTACAGAGAAGAGACTTTGCTTAACGTCATTAAAAGTGTCA CTCGCAACGGACGCTCCATCATCCTGACGGCAGTTCTGGCTTTGATCCTGGTTTACCTGT TCTCAATAGTGGGCTACCTTTTCTTCAAGGATGACTTTATCTTGGAAGTAGATAGGCTGC CCAATGAAACTGCTCTTCCAGAAGCCAGCGAGAGTTTGGCAAGTGAGTTCCTGTACTCTG ACGTGTGTAGGGTGGAGACTGGGGAAAACTGCTCCTCTCCTGCACCCAAAGAAGAGTTGG TCCCTGCTGAGGAGACAGAGCAAGATAAAGAGCACACGTGTGAGACGCTGCTGATGTGCA TCGTCACGGTGCTGAGTCACGGGCTGCGGAGCGGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 563-682, - strand, RNAz p=0.664204 | |
| 922-1041, + strand, RNAz p=0.70173 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 563-682, - strand, RNAz p=0.664204 | |
| 922-1041, + strand, RNAz p=0.70173 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 187-381, gnl|bosTau2|chr22 (16996878-16997072) | |
| 187-381, gnl|canFam2|chr20 (15803291-15803089) | |
| 187-381, gnl|danRer3|chr6 (20305434-20305232) | |
| 187-381, gnl|dasNov1|scaffold_188988 (3679-3881) | |
| 187-381, gnl|echTel1|scaffold_320874 (4822-5024) | |
| 187-381, gnl|fr1|chrUn (146459401-146459604) | |
| 187-381, gnl|galGal2|chr12 (18446618-18446818) | |
| 187-381, gnl|hg17|chr3 (4804628-4804830) | |
| 187-381, gnl|Hg17|chr3 (4804629-4804823) | |
| 187-381, gnl|loxAfr1|scaffold_39489 (28385-28587) | |
| 187-381, gnl|mm7|chr6 (108587736-108587938) | |
| 187-381, gnl|Mm7|chr6 (108587737-108587931) | |
| 187-381, gnl|monDom2|scaffold_5 (30490724-30490925) | |
| 187-381, gnl|oryCun1|scaffold_206095 (76960-77164) | |
| 187-381, gnl|panTro1|chr2 (4923845-4924047) | |
| 187-381, gnl|rheMac2|chr2 (56239413-56239211) | |
| 187-381, gnl|rn3|chr4 (144218861-144219063) | |
| 187-381, gnl|tetNig1|chr11 (9489297-9489098) | |
| 187-381, gnl|xenTro1|scaffold_173 (1795317-1795517) | |
| 503-682, gnl|bosTau2|chr22 (17009454-17009633) | |
| 503-682, gnl|canFam2|chr20 (15791032-15790830) | |
| 503-682, gnl|danRer3|chr6 (20303641-20303456) | |
| 503-682, gnl|echTel1|scaffold_324286 (42529-42327) | |
| 503-682, gnl|fr1|chrUn (146462650-146462840) | |
| 503-682, gnl|galGal2|chr12 (18452826-18453012) | |
| 503-682, gnl|hg17|chr3 (4817104-4817306) | |
| 503-682, gnl|Hg17|chr3 (4817107-4817286) | |
| 503-682, gnl|loxAfr1|scaffold_325 (105930-106091) | |
| 503-682, gnl|mm7|chr6 (108599910-108600112) | |
| 503-682, gnl|Mm7|chr6 (108599913-108600092) | |
| 503-682, gnl|monDom2|scaffold_5 (30505043-30505246) | |
| 503-682, gnl|oryCun1|scaffold_142468 (247-459) | |
| 503-682, gnl|panTro1|chr2 (4936294-4936496) | |
| 503-682, gnl|rheMac2|chr2 (56226965-56226763) | |
| 503-682, gnl|rn3|chr4 (144230628-144230830) | |
| 503-682, gnl|tetNig1|chr11 (9486078-9485892) | |
| 503-682, gnl|xenTro1|scaffold_173 (1796208-1796395) | |
| 845-1041, gnl|bosTau2|chr22 (17019907-17020103) | |
| 845-1041, gnl|canFam2|chr20 (15781968-15781739) | |
| 845-1041, gnl|danRer3|chr6 (20302843-20302648) | |
| 845-1041, gnl|dasNov1|scaffold_47551 (8928-8698) | |
| 845-1041, gnl|echTel1|scaffold_320874 (31614-31835) | |
| 845-1041, gnl|fr1|chrUn (146464363-146464583) | |
| 845-1041, gnl|galGal2|chr12 (18455656-18455859) | |
| 845-1041, gnl|hg17|chr3 (4827948-4828177) | |
| 845-1041, gnl|Hg17|chr3 (4827948-4828144) | |
| 845-1041, gnl|loxAfr1|scaffold_1409 (8328-8558) | |
| 845-1041, gnl|mm7|chr6 (108609795-108610020) | |
| 845-1041, gnl|Mm7|chr6 (108609795-108609991) | |
| 845-1041, gnl|monDom2|scaffold_5 (30520617-30520842) | |
| 845-1041, gnl|oryCun1|scaffold_206095 (101114-101343) | |
| 845-1041, gnl|panTro1|chr2 (4947118-4947347) | |
| 845-1041, gnl|rheMac2|chr2 (56216276-56216047) | |
| 845-1041, gnl|rn3|chr4 (144240829-144241054) | |
| 845-1041, gnl|tetNig1|chr11 (9485390-9485203) | |
| 845-1041, gnl|xenTro1|scaffold_173 (1798514-1798732) | |
| 1133-1236, gnl|bosTau2|chr22 (17022833-17022936) | |
| 1133-1236, gnl|Hg17|chr3 (4831105-4831208) | |
| 1133-1236, gnl|Mm7|chr6 (108612726-108612829) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 187-381, gnl|bosTau2|chr22 (16996878-16997072) | |
| 187-381, gnl|canFam2|chr20 (15803291-15803089) | |
| 187-381, gnl|danRer3|chr6 (20305434-20305232) | |
| 187-381, gnl|dasNov1|scaffold_188988 (3679-3881) | |
| 187-381, gnl|echTel1|scaffold_320874 (4822-5024) | |
| 187-381, gnl|fr1|chrUn (146459401-146459604) | |
| 187-381, gnl|galGal2|chr12 (18446618-18446818) | |
| 187-381, gnl|hg17|chr3 (4804628-4804830) | |
| 187-381, gnl|Hg17|chr3 (4804629-4804823) | |
| 187-381, gnl|loxAfr1|scaffold_39489 (28385-28587) | |
| 187-381, gnl|mm7|chr6 (108587736-108587938) | |
| 187-381, gnl|Mm7|chr6 (108587737-108587931) | |
| 187-381, gnl|monDom2|scaffold_5 (30490724-30490925) | |
| 187-381, gnl|oryCun1|scaffold_206095 (76960-77164) | |
| 187-381, gnl|panTro1|chr2 (4923845-4924047) | |
| 187-381, gnl|rheMac2|chr2 (56239413-56239211) | |
| 187-381, gnl|rn3|chr4 (144218861-144219063) | |
| 187-381, gnl|tetNig1|chr11 (9489297-9489098) | |
| 187-381, gnl|xenTro1|scaffold_173 (1795317-1795517) | |
| 503-682, gnl|bosTau2|chr22 (17009454-17009633) | |
| 503-682, gnl|canFam2|chr20 (15791032-15790830) | |
| 503-682, gnl|danRer3|chr6 (20303641-20303456) | |
| 503-682, gnl|echTel1|scaffold_324286 (42529-42327) | |
| 503-682, gnl|fr1|chrUn (146462650-146462840) | |
| 503-682, gnl|galGal2|chr12 (18452826-18453012) | |
| 503-682, gnl|hg17|chr3 (4817104-4817306) | |
| 503-682, gnl|Hg17|chr3 (4817107-4817286) | |
| 503-682, gnl|loxAfr1|scaffold_325 (105930-106091) | |
| 503-682, gnl|mm7|chr6 (108599910-108600112) | |
| 503-682, gnl|Mm7|chr6 (108599913-108600092) | |
| 503-682, gnl|monDom2|scaffold_5 (30505043-30505246) | |
| 503-682, gnl|oryCun1|scaffold_142468 (247-459) | |
| 503-682, gnl|panTro1|chr2 (4936294-4936496) | |
| 503-682, gnl|rheMac2|chr2 (56226965-56226763) | |
| 503-682, gnl|rn3|chr4 (144230628-144230830) | |
| 503-682, gnl|tetNig1|chr11 (9486078-9485892) | |
| 503-682, gnl|xenTro1|scaffold_173 (1796208-1796395) | |
| 845-1041, gnl|bosTau2|chr22 (17019907-17020103) | |
| 845-1041, gnl|canFam2|chr20 (15781968-15781739) | |
| 845-1041, gnl|danRer3|chr6 (20302843-20302648) | |
| 845-1041, gnl|dasNov1|scaffold_47551 (8928-8698) | |
| 845-1041, gnl|echTel1|scaffold_320874 (31614-31835) | |
| 845-1041, gnl|fr1|chrUn (146464363-146464583) | |
| 845-1041, gnl|galGal2|chr12 (18455656-18455859) | |
| 845-1041, gnl|hg17|chr3 (4827948-4828177) | |
| 845-1041, gnl|Hg17|chr3 (4827948-4828144) | |
| 845-1041, gnl|loxAfr1|scaffold_1409 (8328-8558) | |
| 845-1041, gnl|mm7|chr6 (108609795-108610020) | |
| 845-1041, gnl|Mm7|chr6 (108609795-108609991) | |
| 845-1041, gnl|monDom2|scaffold_5 (30520617-30520842) | |
| 845-1041, gnl|oryCun1|scaffold_206095 (101114-101343) | |
| 845-1041, gnl|panTro1|chr2 (4947118-4947347) | |
| 845-1041, gnl|rheMac2|chr2 (56216276-56216047) | |
| 845-1041, gnl|rn3|chr4 (144240829-144241054) | |
| 845-1041, gnl|tetNig1|chr11 (9485390-9485203) | |
| 845-1041, gnl|xenTro1|scaffold_173 (1798514-1798732) | |
| 1133-1236, gnl|bosTau2|chr22 (17022833-17022936) | |
| 1133-1236, gnl|Hg17|chr3 (4831105-4831208) | |
| 1133-1236, gnl|Mm7|chr6 (108612726-108612829) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| clu (0.358938) | |
| hea (0.204499) | |
| spl (0.143184) | |
| eru (0.120048) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.358938) | |
| hea (0.204499) | |
| spl (0.143184) | |
| eru (0.120048) |