Non-Coding RNA Search

Ss1.1-rspl01_m1.5

Sequence:


               
               TAAATTCATATGTCAAAAAACTAGACTGAAAAAGTTCTTCTTCACTGATCTTCTTTCTGA
ATTCCTTTTTTAAAACATCCATCA------------------------------------
GCAGTGGCTTGGGTCGCTGCTGTGGCTGGATCTCCAGCCCAGAAACTTCTGGCCAGAAAA
AAAAAAAAACAAAACTGTCATAATGACTGATTTCCAAACTGCTGAAAAAAAGCAATAATC
AACCCAAAAAACTATAAAATCCTAATTCAAAGGAAACATGCTGGGAAACCCACCATCACA
AACCATTTTTCAGCCGATCGTTTTTCATTGCATGTGTTCTGGGATTAGAGGACAGGGAAG
GGGTTGTGAATAGAAATACTGCCTTTATCTTGAGAAAACTTATTATTTCCTATAACTCCA
CGGAAAGAGTTGGTATGAAGTCTTAGATAACAGGATTGTTGACATTTAGCCATAGTTCCA
CTATGTGGTGAAGTAGATGCCCATAGTGAAAAATCCACTTAACTAATTTCCCAGATACAA
TTAAAATCTGACGACTGCTCACTTTGAATATGGAGAACATTCCTGCATTAATCATGACAT
AACAGTACACTTTTATTCTTTTTTTTAAACAGCAGAGACACACTGTACCTGCTTTCCCTT
GTAAGTCAACAGCCTGTGACACATTCTGTACTTTTACTGACTAGCAATGCAGTGTTACTG
TCAATAATTAAATGGGACATAAGCTATAGTATATCGAAATTTAAAATTTGGTAATCTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAATTCATATGTCAAAAAACTAGACTGAAAAAGTTCTTCTTCACTGATCTTCTTTCTGA
ATTCCTTTTTTAAAACATCCATCA------------------------------------
GCAGTGGCTTGGGTCGCTGCTGTGGCTGGATCTCCAGCCCAGAAACTTCTGGCCAGAAAA
AAAAAAAAACAAAACTGTCATAATGACTGATTTCCAAACTGCTGAAAAAAAGCAATAATC
AACCCAAAAAACTATAAAATCCTAATTCAAAGGAAACATGCTGGGAAACCCACCATCACA
AACCATTTTTCAGCCGATCGTTTTTCATTGCATGTGTTCTGGGATTAGAGGACAGGGAAG
GGGTTGTGAATAGAAATACTGCCTTTATCTTGAGAAAACTTATTATTTCCTATAACTCCA
CGGAAAGAGTTGGTATGAAGTCTTAGATAACAGGATTGTTGACATTTAGCCATAGTTCCA
CTATGTGGTGAAGTAGATGCCCATAGTGAAAAATCCACTTAACTAATTTCCCAGATACAA
TTAAAATCTGACGACTGCTCACTTTGAATATGGAGAACATTCCTGCATTAATCATGACAT
AACAGTACACTTTTATTCTTTTTTTTAAACAGCAGAGACACACTGTACCTGCTTTCCCTT
GTAAGTCAACAGCCTGTGACACATTCTGTACTTTTACTGACTAGCAATGCAGTGTTACTG
TCAATAATTAAATGGGACATAAGCTATAGTATATCGAAATTTAAAATTTGGTAATCTTAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               162-744, gnl|bosTau2|chr3 (30041054-30040469)
               

               
               162-744, gnl|Hg17|chr1 (110909149-110908591)
               

               
               162-744, gnl|Mm7|chr3 (106871711-106872254)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               162-744, gnl|bosTau2|chr3 (30041054-30040469)
               

               
               162-744, gnl|Hg17|chr1 (110909149-110908591)
               

               
               162-744, gnl|Mm7|chr3 (106871711-106872254)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               hyp (0.142837)

	162-744, gnl\|bosTau2\|chr3 (30041054-30040469)
	162-744, gnl\|Hg17\|chr1 (110909149-110908591)
	162-744, gnl\|Mm7\|chr3 (106871711-106872254)