Non-Coding RNA Search

Ss1.1-rspl01_o13.5

Sequence:


               
               CGCCCGGCCGCACAGACCTTTTCTGAAGAAGCGCTGCGGGTGGCGAGGACTGGCCGGCGG
CGTCCGAGGCCCGCGCCCCGCCGCCACCCCCACACGCCTGCCGGCCGGTCTCTCCGGCCG
CCGCCATGTCCTCCTCCTCATCCTCCCCTAGGGAGACGTATGAGGAGGACCGGGAATACG
AGAGCCAGGCCAAGCGCCTCAAGACCGAGGAGGGAGAAATCGACTACTCTGCGGAGGAAG
GCGAGAATCGCCGGGAAGCGACGCCCCGGAGCGGGGGCGATGGCAGCGGCGGCCGAAGCT
TCTCACAGCCGGAGGCAGGTGGAAGTCATCATAAAGTTTCTGTTTCACCTGTTGTCCATG
TTCGAGGACTCTGTGAATCTGTGGTGGAAGCAGACCTCGTGGAGGCTCTGGAAAAATTTG
GGACAATATGCTATGTGATGATGATGCCATTTAAACGGCAGGCTCTAGTGGAATTTGAGA
ACATAGATAGTGCCAAAGAATGTGTGACGTTTGCTGCAGATGAACCCGTGTACATAGCTG
GTCAGCAGGCTTTTTTCAACTACTCTACAAGCAAAAGGATCACTCGGCCAGGAAATACTG
ATGATCCATCAGGAGGCAACAAAGTTCTTCTGCTCTCAATTCAGAATCCTCTTTATCCAA
TTACAGTGGATGTTTTATATACTGTATGCAATCCTGTTGGAAAAGTGCAACGTATTGTTA
TATTTAAGAGAAATGGGATACAAGCAATGGTTGAGTTTGAATCAGTCCTTTGTGCCCAGA
AAGCTAAAGCAGCACTCAATGGAGCAGATATATATGCGGGATGTTGCACCCTAAAAATTG
AATATGCAAGGCCAACTCGTCTAAATGTTATTAGGAATGACAATGACAGTTGGGACTACA
CTAAACCATATTTGGGGAGACGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCCGGCCGCACAGACCTTTTCTGAAGAAGCGCTGCGGGTGGCGAGGACTGGCCGGCGG
CGTCCGAGGCCCGCGCCCCGCCGCCACCCCCACACGCCTGCCGGCCGGTCTCTCCGGCCG
CCGCCATGTCCTCCTCCTCATCCTCCCCTAGGGAGACGTATGAGGAGGACCGGGAATACG
AGAGCCAGGCCAAGCGCCTCAAGACCGAGGAGGGAGAAATCGACTACTCTGCGGAGGAAG
GCGAGAATCGCCGGGAAGCGACGCCCCGGAGCGGGGGCGATGGCAGCGGCGGCCGAAGCT
TCTCACAGCCGGAGGCAGGTGGAAGTCATCATAAAGTTTCTGTTTCACCTGTTGTCCATG
TTCGAGGACTCTGTGAATCTGTGGTGGAAGCAGACCTCGTGGAGGCTCTGGAAAAATTTG
GGACAATATGCTATGTGATGATGATGCCATTTAAACGGCAGGCTCTAGTGGAATTTGAGA
ACATAGATAGTGCCAAAGAATGTGTGACGTTTGCTGCAGATGAACCCGTGTACATAGCTG
GTCAGCAGGCTTTTTTCAACTACTCTACAAGCAAAAGGATCACTCGGCCAGGAAATACTG
ATGATCCATCAGGAGGCAACAAAGTTCTTCTGCTCTCAATTCAGAATCCTCTTTATCCAA
TTACAGTGGATGTTTTATATACTGTATGCAATCCTGTTGGAAAAGTGCAACGTATTGTTA
TATTTAAGAGAAATGGGATACAAGCAATGGTTGAGTTTGAATCAGTCCTTTGTGCCCAGA
AAGCTAAAGCAGCACTCAATGGAGCAGATATATATGCGGGATGTTGCACCCTAAAAATTG
AATATGCAAGGCCAACTCGTCTAAATGTTATTAGGAATGACAATGACAGTTGGGACTACA
CTAAACCATATTTGGGGAGACGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|31416927|gb|AAH08217.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31416927|gb|AAH08217.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               83-588, - strand, RNAz p=0.945866

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-588, - strand, RNAz p=0.945866

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-312, gnl|bosTau2|chr11 (16157708-16158016)
               

               
               5-312, gnl|Hg17|chr2 (38741540-38741230)
               

               
               5-312, gnl|Mm7|chr17 (78357803-78357369)
               


               
               430-679, gnl|bosTau2|chr11 (16174009-16174259)
               

               
               430-679, gnl|Hg17|chr2 (38724675-38724425)
               

               
               430-679, gnl|Mm7|chr17 (78346579-78346325)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-312, gnl|bosTau2|chr11 (16157708-16158016)
               

               
               5-312, gnl|Hg17|chr2 (38741540-38741230)
               

               
               5-312, gnl|Mm7|chr17 (78357803-78357369)
               


               
               430-679, gnl|bosTau2|chr11 (16174009-16174259)
               

               
               430-679, gnl|Hg17|chr2 (38724675-38724425)
               

               
               430-679, gnl|Mm7|chr17 (78346579-78346325)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fty (0.17584)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)

	5-312, gnl\|bosTau2\|chr11 (16157708-16158016)
	5-312, gnl\|Hg17\|chr2 (38741540-38741230)
	5-312, gnl\|Mm7\|chr17 (78357803-78357369)

	430-679, gnl\|bosTau2\|chr11 (16174009-16174259)
	430-679, gnl\|Hg17\|chr2 (38724675-38724425)
	430-679, gnl\|Mm7\|chr17 (78346579-78346325)

	fty (0.17584)
	liv (0.146284)
	spl (0.143184)
	hyp (0.142837)
	ova (0.129132)
	ecc (0.115035)